Caldicellulosiruptor owensensis: Calow_0874
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Entry
Calow_0874 CDS
T01347
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calow_0874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cow03019
]
Calow_0874
03016 Transfer RNA biogenesis [BR:
cow03016
]
Calow_0874
Enzymes [BR:
cow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Calow_0874
Messenger RNA biogenesis [BR:
cow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calow_0874
Transfer RNA biogenesis [BR:
cow03016
]
Prokaryotic type
tRNA degradation factors
Calow_0874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
Motif
Other DBs
NCBI-ProteinID:
ADQ04442
UniProt:
E4Q6E3
LinkDB
All DBs
Position
961974..964079
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AA seq
701 aa
AA seq
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MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV
DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD
PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGRIVINPTAKEREVSKLHLVVSG
TKDRVMMIEAGAKEVPEDIMIEAIMTAQEEIKKIVEFIEGIVKEVGKPKMEYQKRIVPEE
IKQKVREIAYDKVYQYVQIPDKIERDKKLDELKEEVFKAFEGETEETLLLVDDALYNLEK
EIVRKMIAEEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEM
QFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEFP
YTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKEDGSFILLTDI
QGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTII
DKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAPD
DISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDEKRLKS
VDEVVKVGDLVLVKVIGIDKLGRLSLSRKEALNVTYSRKAK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ttggagagtaaaatttacaaaatggaacttgcgggaagagagctcagctttgagattggg
aaatatgctcttttggcaaacggggctgtgcttgcaagatatggtgatacagctgtgctt
gtcactgcatgtgcttctgaaaagcccagagaaggtataaactttttcccgcttacagtt
gactatgaggagaggttgtactcggttgggaaaattccgggcggatttataaagagagaa
ggcaaaccgtcagaaaaggcaattctttctgcaaggctgatagacagacctataagaccg
cttttcccaaaggatttttatcatgatgtctctgttatagccacagtactgtcagttgac
cctgacaatccaccggatgttctcgcaatgcttggttcatctgttgcattgtcaatctcc
gatataccatttgaagggccgactggttctgtgcttgttgggtatgtggatggaaggatt
gtcataaaccctacggctaaagaaagggaagtgagcaagcttcatcttgttgtgtcgggg
acaaaagacagagtgatgatgatagaagctggtgcgaaagaagttcctgaggacattatg
attgaggctatcatgacagcacaagaagagatcaaaaagattgttgagttcattgaagga
atagtaaaagaagttggcaaaccaaaaatggagtatcaaaagagaattgtgccagaggag
ataaaacaaaaggtacgtgagattgcatatgacaaggtttatcagtatgtgcagataccc
gacaagattgagagggataagaagcttgatgagctcaaagaagaagtgttcaaagctttc
gaaggtgagacagaagaaactcttttacttgtggatgatgcgctttataaccttgaaaaa
gagattgtcagaaaaatgattgcagaggaaggaaaacgccctgatggcagaaagtttgac
gaaataagacctctttatgctgaggttggtattttgccaagaactcatggttctgctctc
ttcaaaagaggttacactcaagttttgacagttgctactcttgggacgaaaggtgagatg
caatttttagacggccttgaagaagaagaggcaaaaaggtatatgcatcattataatttc
ccaccattctctacaggtgaatcaaaacctataagaggtccaggaagaagagagattgga
cacggtgcattggctgaaagggcacttgaacctgttattccttcagaggatgaatttcct
tatacaattcgacttgtatctgaggttttgacatctaacggttcaacatcacaggcaagt
gtatgtggtagcacccttgcgctgatggatgctggtgtgccaattaaagcgcctgttgca
ggaatttctattggtcttattacaaaagaggacgggagttttattttacttactgacatt
caaggtatagaagacttctttggagatatggactttaaggtagcagggaccagagaaggt
attactgctattcagcttgacataaaaatccatggacttacaagagaaattatcgaaaag
gcactctatcaggcaaaagaagcaagactgaagattttagattttatgcaaactataatt
gacaagccaagaagcgagctttcaccttatgctccaaagatattcaaaactacagttgat
cctgaaaagattcgagacataattggaccaggtggaaagatgataaataaaatcatcgca
gagacaaacgtaaaaattgatatagaacctgatgggagaatatttgttgcggcacctgat
gacatatcaggtaacagagcaataagcatgattgagggaattggtcgtgagattgaggtt
gggcagtttttccttggaaaagttacaagaactgcatcttatggagcatttgttgaaata
tatcctggcaaagaaggacttgtccatatatctcagttagatgaaaaaagattaaagtct
gtagacgaggttgtaaaagttggagatttggtgcttgtaaaggtaatagggattgacaaa
cttggcagactttcactttcacgaaaagaagcactgaatgtcacatactcaagaaaagca
aaataa
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