Caldicellulosiruptor owensensis: Calow_0880
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Entry
Calow_0880 CDS
T01347
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calow_0880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_0880
03019 Messenger RNA biogenesis [BR:
cow03019
]
Calow_0880
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Calow_0880
Messenger RNA biogenesis [BR:
cow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Calow_0880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
TEP1_CUB2
AAA_22
S1CSD-TOTE-2
AAA_24
NACHT
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
ADQ04448
UniProt:
E4Q6E9
LinkDB
All DBs
Position
969685..971355
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AA seq
556 aa
AA seq
DB search
MPGSVEEFLEGKSIIELREIAKSLGIQKYSLLKKGELMEAIKNFLGSSEEDATVLEGIGK
KEKGRRGRKKKSETAEVQQTFELKSEEQESKLEETEEKKEARLNEMENKEEDNIKEQTLS
QDTQKEEEKTEKPVDVSLNEENKEESKVIELKPKKEEKREDKMQIEIPPELKELEGKVEI
GGIGEGVLEIIYEPGGGGGYGFLRDDSFVPGPNDIYVSPSQIRKFNLKTGDKIRGPIRLP
KENEKFAGLLYVQSVNDMKPEEVAKRTPFEDLTPIFPNKRIILENKNEPKDLAVRLIDLI
APIGRGQRGLIVAPPKAGKTTLLKKIANSILTNYDDLHLIVLLIDERPEEVTDMQDSIKA
EIHYSTFDETPEHHIKVAEMVLERAMRLVECKKDVVILLDSLTRLARAYNLVEPPSGRTL
SGGLDPNALHKPKKFFGAARNLKEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELHL
DRKLSEKRIFPAIDINKSGTRREELLLSEEEKAAVDAIRRALSNFGTAETTERIISMLSQ
TKSNEEFIRKILQNLR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgggtcagttgaagagtttttagagggaaagtctattattgaacttagagaaata
gcaaaaagtctgggtattcaaaaatattctttgctcaaaaaaggtgagttgatggaagct
attaaaaattttctgggaagttcggaagaagatgcaacagttcttgaaggcataggtaaa
aaagaaaaaggtagaagaggaagaaagaagaaatcagaaactgcagaagttcagcagact
tttgaattaaagagcgaggagcaagaatcaaagcttgaagagactgaggaaaagaaagag
gcaagactaaatgaaatggaaaataaagaagaagataacataaaagaacaaactttgtcg
caggacacacaaaaagaagaagaaaaaactgaaaagcctgtagatgttagtttgaatgag
gagaacaaagaagagagtaaggtaatagagttaaaacctaaaaaagaagaaaaaagagag
gataagatgcagatagaaattccaccagaattaaaagaacttgaaggtaaagtggagata
ggcggcataggagaaggagttttggaaataatttatgaacctggtggcggtggcggttac
ggttttttacgcgacgattcgtttgttcctggcccaaacgacatatatgtttcgccatct
caaatcagaaaattcaatctcaaaacgggtgataaaattagaggtcccattagacttcca
aaagaaaatgagaagtttgcaggacttttgtatgttcagagcgtcaacgatatgaaacca
gaagaagttgcaaaacgcactccttttgaagatcttacccctattttcccaaacaaaaga
ataattttggaaaataaaaatgagcctaaggatttagcggtgagactgatagaccttatt
gcgccaattggaagaggccagagaggattaattgtagcaccaccaaaagcaggtaaaact
acactattaaagaaaatagcaaatagtattctcacaaactatgatgatttgcatttgatt
gtactgctcatcgatgaaagacctgaagaggtcactgatatgcaggactcaattaaagca
gagatacattactcaacatttgacgaaactccagaacaccacataaaagttgctgaaatg
gttttagaaagggctatgagacttgtggagtgtaaaaaagatgttgtcattttgttagat
agcttgacaaggcttgcacgtgcttataacttggttgaaccaccatctggcagaacactc
tctggtggtcttgacccgaacgctcttcacaaacctaaaaagttttttggtgctgcaaga
aaccttaaagagggtggcagccttaccatccttgcaacagcattgattgagacagggtca
cgaatggacgatgtcatatttgaagagttcaagggcactggcaacatggagctgcacctt
gacagaaaactttctgaaaaacgaatattccctgctattgatataaacaagtcagggaca
agaagagaggagcttttgctgtctgaagaagaaaaagcagctgtggatgctatcagaaga
gcactttctaactttggaacagctgaaactacagagagaattataagtatgctttcccaa
acaaagtcaaatgaagaattcataagaaagatattacaaaatttgagataa
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