Caldicellulosiruptor owensensis: Calow_1076
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Entry
Calow_1076 CDS
T01347
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03420
Nucleotide excision repair
cow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calow_1076
03430 Mismatch repair
Calow_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cow03400
]
Calow_1076
Enzymes [BR:
cow01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Calow_1076
DNA repair and recombination proteins [BR:
cow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calow_1076
MMR (mismatch excision repair)
Other MMR factors
Calow_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
AAA_11
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
ADQ04639
UniProt:
E4Q180
LinkDB
All DBs
Position
1162668..1164812
Genome browser
AA seq
714 aa
AA seq
DB search
MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILSMGLADPDNILAITFT
NKAADEMKERIKKLVSTKSFAEMWVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQI
LRECFNKLNIDTEKLDIRYVSRLISNYKNQLIGPSDVSRYSDVDARIIEVYKLYNKLLKE
YNAFDFDDLLYYTVVLFETNPDILEKYQNKFKYILVDEYQDTNYAQFYFIYLLSQKHMNV
CVVGDDDQSIYSFRGANIKNILEFEKVFSNAKVIKLEKNYRSTKTILSAANEVIKHNYYR
KSKMLWTDNHEGEKIFLYSAFDEVNEAEFVAASIKNLIENGVLPSQIGVLYRTNAQSVNF
ENALSAYSVPYKVVGALRFYERKEIKDIIAYLRLITNSHDDLSLFRIINVPRRGIGNSTL
EKIKVLSEEYGVSAYTILLERAKFDFDKKTYEKLNSFVSLIEDLKAEAENLSVSQTIKLV
LDRTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEENEEPTVQNFLNSITLSSEEEDT
QKEEKVSLMTVHAAKGLEFEVVFLTGLEEGLFPLVRAEEALEAEKELEEERRLCYVAITR
AKKLLVLTYANNRRVFGRFSFRQKSCFIDEIPQKYIQNIYGPITKICHTLSAGINQVDDA
SISNLQVGNKVQHGKFGVGKVIWLSDDMKEVVVEFEEIGQKRLLLSYANLKRIG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggaatggttaaaagaactaaatgaacagcagaaagaggcggttctttcaacagaaggg
ccgcttttagtattagctggtgcaggttcgggtaaaactcgtgtaataacatacagaata
gcatatatattgagtatgggattagcagatccagacaatattcttgctattacatttacg
aacaaagctgctgatgagatgaaagaaaggataaaaaagcttgttagtactaagtctttt
gcagagatgtgggtgtctacttttcacgctgcatgtgcaaggattttgagaatggaagct
cataacataggattttcaaataactttgtaatatttgatacacaagatagaaatcaaatt
ttaagagaatgttttaacaagctaaacatagatacagagaagcttgatattagatatgtg
tcaaggctgattagtaattataaaaatcaattaattggaccttctgatgtctccagatat
agtgatgttgatgctcgtattattgaagtgtataaactttacaataaacttttaaaagag
tacaatgcatttgatttcgatgatcttctatattatactgtagttctttttgaaacaaac
cctgacattcttgagaagtatcagaataagtttaaatacatcctggtggatgagtatcag
gacactaattatgcccagttttattttatttatttgctttcccaaaaacacatgaatgtc
tgtgttgtcggtgatgacgaccagagtatatacagtttcagaggagcaaatataaaaaat
attttagaatttgaaaaggtttttagcaatgctaaggtaataaaattagaaaaaaactac
aggtctacaaagacaatactctcagctgcgaacgaggttataaaacacaactattacaga
aaatccaaaatgttatggacagacaaccatgagggtgaaaagatttttctatactcagct
tttgatgaagtgaatgaagcagagtttgttgcagcaagtataaagaatctaatagaaaat
ggagttttaccttctcaaataggagttctttacagaacaaacgctcagtctgtaaatttt
gagaatgcactttcggcttattctgtaccatataaagttgtaggtgctttgcgattttat
gaaagaaaagaaataaaagatattattgcttatttgagactcattacaaattcgcatgac
gatttgagtctatttaggattatcaatgttcccagaagaggaattgggaacagtacctta
gagaaaataaaagttttgagtgaagagtatggcgtttcagcgtatacaattttactcgag
cgagcaaaatttgattttgacaaaaagacatatgaaaaactaaatagctttgtatctctg
atagaagatttaaaagctgaggcagaaaatttgtctgtaagtcagactattaaacttgtg
cttgacaggacggggtacttagaaagtttgctcagtagcaaaagtgaagaagagtttcaa
agagccaagaatattgagcaacttataagtgctgcagctatttttgaagaagagaatgaa
gagcctactgtgcaaaactttctaaactctattactttgagctctgaagaagaagatact
caaaaagaagaaaaagtttcgcttatgactgttcatgcagccaaaggattagaatttgag
gtcgtttttcttactgggttggaagagggattatttccgcttgttagggcagaagaagct
cttgaggctgaaaaagaactcgaagaggaaagaagactgtgttatgtagcaattacaaga
gccaaaaagcttcttgttctgacatatgctaataatcgaagagtgtttggcaggttttct
tttcgacaaaaatcatgtttcattgacgagattccacaaaaatatattcaaaatatttat
ggacctattaccaagatttgtcatacattatctgccgggattaatcaagttgatgatgct
tctatcagcaatctacaagttggaaacaaggtccagcatggcaagtttggagttgggaag
gttatttggctttcagacgatatgaaagaggtagtagtagagtttgaagagattggtcag
aagaggttgcttctgtcctatgcaaatcttaaaaggattggttga
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