Caldicellulosiruptor owensensis: Calow_1217
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Entry
Calow_1217 CDS
T01347
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Calow_1217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cow03400
]
Calow_1217
DNA repair and recombination proteins [BR:
cow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Calow_1217
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Calow_1217
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
Kinesin
Microtub_bd
Flavi_DEAD
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADQ04775
UniProt:
E4Q1P1
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Position
complement(1301023..1303008)
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AA seq
661 aa
AA seq
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MKKFKLVSDFKPTGDQPKAIEMLTEGILKGEKFQTLLGVTGSGKTFTMAKVIENVQRPTL
VLAHNKTLAAQLCSEFREFFPENAVEFFVSYYDYYQPEAYIPETDTYIEKDSSINEEIDK
LRHSATSALFERRDVIIVASVSCIYSLGSPEDYLNLTISLRPGMTKDRDEVIRELIRMQY
ERNDIDFRRGRFRVRGDVLEVFPASNTDRAIRIEFFGDEIERITEFNVVTGEVIGRRNHV
AIFPASHYVTTAEKLKRAIKSIEEELEQRLKELRSMGKLVEAQRLEQRTRYDIEMLQEMG
FCKGIENYSRHLTGRPPESPPYTLLDYFPKDFIMFIDESHVTIPQVRAMYNGDRARKDAL
VEYGFRLPSAYDNRPLTFEEFEEKLNQVIFVSATPGPYEIKKSSRIVEQIIRPTGLVDPE
IEVHPVQGQIDHLIGEIRKRVEKNQRVLVTTLTKKMAESLTDYLKDVGIKVRYMHSDIDT
IERMQIIRDLRLGKFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNVDGKVIMYADRITNAMQRAIDETNRRRKIQIEYNQKHGIIPQTVKKGIRQIIEATVS
VAEEEEKYEVVEKDIVKNMTKEEIKEYIKELEQEMKKLAIELEFEKAAKVRDKIFELRKL
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatttaagcttgtttcagactttaaaccaacaggtgatcagccaaaagcaata
gagatgttaacagaaggaattttaaaaggcgaaaaatttcagacccttttaggtgtcaca
gggtctggcaagacatttacaatggcaaaggtcatagagaatgttcaaagacctacactt
gtcttggcacataacaaaaccttagctgcccagctttgtagtgagtttagagaatttttc
ccagaaaatgcagtggaattctttgtgagttattatgactattatcagcctgaagcttat
atcccggagactgacacatatattgaaaaagattcgtctataaatgaagaaattgacaag
ctgagacattcagctacatctgccttatttgaaagaagagatgttataattgttgcaagt
gtatcctgtatttacagtttgggtagtcctgaagattatttaaatcttactatttctttg
cgccctggcatgacaaaagacagagatgaggtcataagagagcttataagaatgcagtat
gaaagaaatgatattgactttcgaagaggcagatttagagtaagaggggatgtacttgaa
gttttccctgcttctaatacagatagggcgataagaatagaatttttcggagatgaaata
gaaaggattacagaatttaatgtcgtgacaggtgaggtaattggacgaaggaatcatgtt
gcaatatttccagcatctcactatgtaacaacagctgagaaattgaaaagagcgataaaa
agtatcgaagaagagcttgaacaaaggctaaaagaactaagaagtatggggaagcttgtt
gaagctcagaggttagagcagagaacacgctatgacatagagatgcttcaggaaatgggt
ttttgcaaagggatagagaactattcaaggcacttaactggcaggccgccagaaagtcca
ccatatactctgcttgattattttccgaaggatttcataatgttcattgacgagtcacat
gttacaatacctcaagtaagagctatgtacaatggtgacagagcaagaaaagatgctctt
gttgaatatggttttagacttccatctgcgtatgataacagaccattgacattcgaagaa
tttgaagaaaagctcaaccaagtaatttttgtaagtgcaacacctgggccttatgaaatc
aaaaagtcttcacgcattgttgagcaaattataagaccgacaggacttgttgaccctgaa
attgaggttcatcctgtacaaggtcagattgaccatctaattggtgaaatacgaaagaga
gtggaaaagaaccagagagtacttgtcactacccttaccaaaaagatggctgaaagcctt
actgactatttaaaagatgtgggaatcaaggtccgatatatgcattcagacatagataca
attgagcgtatgcagattatcagagatttacggcttggcaagtttgatgtgctggtgggg
ataaatctgcttagagaaggtcttgaccttcctgaggtgtcacttgttgcaattttggat
gctgacaaggaaggttttttgaggtcagagacttcgcttatccagacaattggccgggct
gcaagaaacgttgatggaaaggttataatgtatgcagatagaattacaaatgctatgcaa
agagccattgatgaaacaaatcgacgaagaaagattcagatagaatacaaccagaaacat
gggataatacctcaaactgttaaaaaagggataagacagataattgaagcgacagtgtct
gtagctgaagaggaagagaaatatgaagttgtggagaaagacattgtaaagaatatgaca
aaagaagagataaaagaatatattaaggaacttgaacaggagatgaaaaagcttgctata
gaacttgaatttgaaaaggctgcaaaagtaagagacaaaatatttgagctgaggaaactt
ctttaa
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