Caldicellulosiruptor owensensis: Calow_1459
Help
Entry
Calow_1459 CDS
T01347
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calow_1459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_1459
03400 DNA repair and recombination proteins [BR:
cow03400
]
Calow_1459
Enzymes [BR:
cow01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calow_1459
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calow_1459
DNA repair and recombination proteins [BR:
cow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calow_1459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RAD51D_N
TfoX_C
PTS_IIB
Motif
Other DBs
NCBI-ProteinID:
ADQ05006
UniProt:
E4Q2Y8
LinkDB
All DBs
Position
complement(1541158..1542132)
Genome browser
AA seq
324 aa
AA seq
DB search
MIEFQKPAIRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDG
VLHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKIMYIEAQGECEVKAKDIKADADIEI
CNPDHHIATLNQDARLFMEITVNQGKGYVPAERNKQPNQPIGVIPVDSIYTPVVKVNYKV
ENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFSLFTDLSNIPTKIETVVKQ
EPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSLEEVI
QKLHSLGLSLKKSDSTPKEEEEEK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
ttgatagaatttcaaaaaccagcaataaggtgcgaagaactaagcccagacaataaatat
gggcgatatgttattgagcctctggagagaggttatggtataacggttggtaatgcactt
agaaggacactgttgtcatcgttacctggtgcagcagtcacagcggttaagattgatgga
gttttacatgaattttcaacaattccaggggttttagaagatgtgccagagataatactt
aatttaaaaggcttggctatcaagatgtcatccccaggaccaaagataatgtatattgag
gctcagggtgagtgtgaagtaaaagcaaaagatataaaggcagatgctgatatagagatt
tgcaatccagaccatcatattgccacacttaatcaagatgccagactttttatggaaata
acagtaaatcaagggaaaggttatgtcccggctgaaaggaacaaacagccaaaccagcca
ataggtgttattcctgttgattctatttatacacctgttgtaaaggttaactacaaggta
gagaatacaagagttggtcaggtaactgactacgataaattaactatggaaatctggaca
aatgggaccattcgtccagatgaagcgttgaccgttgctgcaaagattttaattgagcat
tttagtctgtttactgatctatctaatattcctacaaagattgagacagttgtaaaacag
gaaccgccaaagagaaataaacttttagatatgactatagaagagcttgaactttcggta
aggtcgtacaactgtcttaaaagagcaggcataaacacagttgaagaccttgtgaacaag
actgaagaagagatgatgaaagtaaggaatttgggcaaaaagtccttagaagaggtcatc
caaaaacttcacagtttaggacttagcctcaaaaagagtgatagtacgccgaaggaggag
gaagaagaaaaatga
DBGET
integrated database retrieval system
