Caldicellulosiruptor owensensis: Calow_1794
Help
Entry
Calow_1794 CDS
T01347
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Calow_1794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cow03019
]
Calow_1794
03016 Transfer RNA biogenesis [BR:
cow03016
]
Calow_1794
Enzymes [BR:
cow01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Calow_1794
Messenger RNA biogenesis [BR:
cow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Calow_1794
Transfer RNA biogenesis [BR:
cow03016
]
Prokaryotic type
tRNA degradation factors
Calow_1794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
WHD_TBPIP
S1_RRP5
Rho_RNA_bind
RNase_II_C_S1
WHD_MCM4
Motif
Other DBs
NCBI-ProteinID:
ADQ05328
UniProt:
E4Q4W8
LinkDB
All DBs
Position
complement(1895259..1897409)
Genome browser
AA seq
716 aa
AA seq
DB search
MKKARIEEKKQEVLALFQEESYHPMTFSEIVEVLNWDEKDEKTLKKILDELEQEGKIVKT
KRGRFGLAEEMNLFAGTLEVNPRGYGFLIPDNPNIPDIYVSAENMNGAMHGDRVLVKALS
AVPVEGKKIEGYVERILQRGITKVVGRYEDSRNFGFVIPDDQRIIYDIYIPKSGKNKAKT
GQKVVVEITRYPEKRRNPEGKIVEILGYENAKGVDILSIIKKYELDEEFPKEVLKEIENI
PDEVTQEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSYYVKP
NTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPNVDRLTFSVLMEIDKQGNVVKH
DIFESVIRSKERMTYTNVTKILKEEDKELLKRYEHIREDLELMRELALILREKRMKRGAL
DFDFDETKVILDKNGKPVDVIRYELTISNKIIEEFMLICNETVANHFYWLNVPFLYRVHE
EPDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAVLEQSRGTPEERVIHTLCLRSLKKA
RYCEENLGHFGLSTDYYCHFTSPIRRYPDLVIHRIMKDVLKGKMTEKKAQRLKLKMPEIA
KWTSQRERVAEEAERETVDLKKVEFMQDKIGQVFEGIISNVTPFGFFVELENTIEGLVRV
GSLEDDYYVFNEKTYQLIGEKSKKVYKIGDRVKVMLIDANVPLRQIEFSVVEKLRT
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaggcaaggattgaagagaaaaaacaagaggttttagctctgtttcaagaagaa
agttatcatcccatgacgttttcagagatagtggaagtattaaactgggatgaaaaggat
gaaaaaactctcaaaaaaatattagatgaacttgaacaggagggcaaaattgtaaagaca
aaacgaggtagatttggtcttgctgaagagatgaacctctttgcaggcactcttgaggta
aatccgcggggctatggttttctgataccggataatcccaatattcctgatatatatgtt
tcggctgagaatatgaatggtgctatgcatggcgacagggtacttgttaaagcgctttct
gctgttcctgttgaaggtaagaaaattgagggatatgttgaaagaatattgcaacgaggt
attacaaaagttgttggaagatatgaggatagcagaaactttggatttgtaattccggac
gaccagaggataatttatgacatatatattcctaaaagtgggaaaaacaaagcaaagaca
ggacaaaaggttgttgttgaaattacaagatatcctgaaaaaagaagaaatccagaggga
aaaattgttgaaattttaggatatgagaatgctaaaggcgttgatattctttcaataatc
aaaaaatatgagcttgatgaagagtttcctaaagaagttttaaaagaaattgagaatatt
ccagacgaggttacacaagaggatttagaaggaagggttgacctgcgcgactggacaatc
tttacaatcgatggtgaagatgcaaaagactttgacgatgcagtgtctataaaaaaactt
ccaaacggaaactatcttttaggtgtccacatcgcagatgtgagctattatgtaaaaccc
aatactcatcttgacaaagaagcttacaggcgaggtacatctgtttatcttgtagatagg
gtaattccaatgcttccttttaagctttcaaacggtatctgttcgctcaaccccaatgtt
gacaggctgacattttcagttcttatggagattgacaaacagggaaatgttgtgaaacat
gacatctttgagagtgttatcagaagcaaggaaagaatgacgtatacaaatgttacaaag
attctcaaagaagaagataaagagcttttgaaaaggtatgaacatataagagaagactta
gagctaatgcgcgagcttgctttaattttgcgtgaaaaaaggatgaaaagaggagctttg
gactttgattttgatgagacaaaagtcatacttgataaaaacggcaaacccgtagacgtt
atccgatatgagcttacaatctctaataaaataatcgaagagttcatgctaatttgtaac
gagacggttgctaatcacttctactggctaaatgttccgtttttgtacagggtacatgaa
gagcctgacatagaaaaaatttaccagtttgcagagtttatatacaatatggggtatgtt
ctaaaaggtatttcaaacaaaatacatcccaaagcattgcaggctgttttagaacagagt
cgtggcacaccagaggaaagagttattcatacattgtgtttgaggtcactcaaaaaagca
aggtattgtgaagaaaatcttggacattttggtctttcaacagactactattgtcatttt
acttcaccgattagaaggtatcctgaccttgtaatccacaggattatgaaagatgttttg
aaaggcaaaatgacagagaagaaagctcagagactgaaacttaaaatgccagagattgca
aaatggacatcacagagagaaagagttgcagaagaagcagaacgtgaaacggttgatctt
aagaaagtagagtttatgcaggataaaattggtcaggtattcgaaggtattatttcgaac
gttacaccttttggattttttgttgagcttgagaatacaattgaaggcctggtaagagtc
ggctcattagaggatgattattatgtcttcaatgaaaagacttatcagcttataggcgaa
aagtcaaaaaaggtgtacaagataggtgacagagtgaaagtaatgctcattgatgctaat
gtgccactcagacagatagagttttctgttgtagaaaaactcagaacgtag
DBGET
integrated database retrieval system
