Caldicellulosiruptor owensensis: Calow_1834
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Entry
Calow_1834 CDS
T01347
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K02405
RNA polymerase sigma factor FliA
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow02020
Two-component system
cow02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Calow_1834
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Calow_1834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cow03021
]
Calow_1834
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
cow02035
]
Calow_1834
Transcription machinery [BR:
cow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calow_1834
Bacterial motility proteins [BR:
cow02035
]
Flagellar system
Flagellar assembly proteins
Stator
Calow_1834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_10
HTH_17
HTH_37
HTH_3
HTH_24
HTH_38
HTH_28
Rv2175c_wHTH
GerE
UPF0122
HTH_29
HTH_5
HTH_Tnp_ISL3
DUF134
HTH_50
Cytidylate_kin2
DUF1798
Sigma70_ECF
PCI
PhyR_sigma-like
MarR_2
Phage_terminase
HTH_6
TnsD
UPF0175
TFCD_C
MarR
NUMOD1
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ADQ05363
UniProt:
E4Q503
LinkDB
All DBs
Position
complement(1932696..1933436)
Genome browser
AA seq
246 aa
AA seq
DB search
MDEALLWEKFIKTKDQKIKEQLIIKYMPLVKLVAGRMAIYFGGNVEYDDLVSYGSIGLLD
AIEKFDSQKGVKFETYAYTRIRGAIIDCVRSQDFLPRSIRQKAKEIEKAYIEIEREGRTP
TDYEVAKRLGISISELQKLQEKISSGMIVSLESFLEQSYESKIGGLEDFVSQPEHFIENE
ELKNVLRQQIDNLMENERMVIMLYYYEELSIKEIAKILGISESRVSQLHTRALLKLRSAL
QKYLEK
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagcattattgtgggaaaagtttataaagaccaaagaccaaaaaataaaagaa
cagctcataataaagtatatgccgcttgtaaagcttgtagctggcagaatggctatatat
tttggcggaaacgttgaatatgatgacctggtaagttatggttcaattggtcttcttgat
gcgatagaaaaatttgatagccaaaagggagtcaaatttgagacatatgcatataccaga
ataagaggtgcgataattgactgtgtcagaagccaggattttttgccacgaagtattcga
caaaaagcaaaggagatagaaaaggcatacattgagatagagagagaaggcagaactcca
acagactatgaggtggccaaaaggctgggaatttcaataagtgaattgcaaaagcttcaa
gagaagatatcaagtggtatgattgtttcactggagagttttttggaacaaagctacgaa
agtaaaattggaggacttgaggattttgtttcacagccagaacattttatagagaatgag
gaacttaaaaatgttttaaggcaacagatagataatcttatggagaatgaaaggatggtg
attatgctttattattacgaagagctgagtataaaagagatagcaaaaattcttggcata
tctgaatcacgtgtgagtcagcttcacacgcgagctcttttaaaactcaggagtgcttta
cagaaatatttagaaaaataa
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