Caldicellulosiruptor owensensis: Calow_2223
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Entry
Calow_2223 CDS
T01347
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cow
Caldicellulosiruptor owensensis
Pathway
cow03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Calow_2223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cow03400
]
Calow_2223
Enzymes [BR:
cow01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Calow_2223
DNA repair and recombination proteins [BR:
cow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Calow_2223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
UvrD-helicase
nSTAND3
DEAD
PIF1
AAA_22
SLFN-g3_helicase
AAA_24
Helicase_RecD
NTPase_1
UvrD_C
PhoH
AAA_12
NPHP3_N
HerA_C
HHH_2
AAA_29
T2SSE
ATPase_2
AAA
AAA_25
MeaB
ABC_ATPase
AAA_28
5_3_exonuc
ABC_tran
Mg_chelatase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADQ05726
UniProt:
E4Q746
LinkDB
All DBs
Position
complement(2387987..2390212)
Genome browser
AA seq
741 aa
AA seq
DB search
MQQNIQGMVSDIIYRNLENSYTVFEIICDDEVFTAVGIVPDIAIGEKVSVYGEFYFHPVY
GQQLKVSYLEKLLPQTKDEIYLYLSSGVIKGIGQKTAKKIVDTFGDDTARILQEEPEKLL
SIRGMTPEKVERIKNMFAFQKFLKDIMSIFSRYGFSQNHAMRLFKLYGFSALSLLQENPY
FLLDVFPELDFKKVDRLALDMGVMLDDRRRISAKILNLLTLAANSEGHTCLPENRLKQIC
SKTLDLPVEKIEEALESLAQERRVVKDEVESQTMIFLYGYYECERYIADKILSMLKEYDD
IADIDEKISLFEAKNGIAFSPNQKKAIKMALTQGVSIITGGPGTGKTTIIKCIIEIFEGA
GKKVFLCAPTGRAAKRMQTACEKEAKTIHRLLEMTVLDTHVIFQRGPNNPLKCDVVVVDE
MSMVDSFLMNYLLSAIKPTTRIVLVGDKDQLPSVGAGNVLKDLIKSQIVPCTILSDVYRQ
SENSFIVLNAHRINKGEFPYLQKESDFYFIQKNSQEEILKTVVELVTKKLPNYLSCDPMT
DIQVLCPSKKGLVGMYNLNRVLQQYLNPPSSHKREYVFKENLFRVGDRVMQVKNNYSLEY
EVIQGEEKGRSSTGIFNGDIGVVKDIDRVQGVLEILFDDEKLVYYDFSLLDDLELAYAMT
VHKSQGSEFRCVVMPIVETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAM
RYSALCDFLLRGQENMQLRAL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaacattcaaggtatggtgagcgatataatctacaggaatttggaaaatagc
tatacggtgtttgagataatctgcgacgatgaggtgttcacagcagtagggatagtacca
gacattgctatcggcgaaaaggtgagcgtatacggtgagttttattttcatcctgtttac
ggtcagcaactgaaagtaagctaccttgaaaaacttttgcctcagacaaaggatgagata
tatctttacctttcttcaggagttataaaaggtatcgggcagaagacagcaaagaagatt
gttgatacatttggagatgacactgcaagaattttgcaggaagagcctgaaaaacttttg
agcattcgcggcatgacccccgaaaaggttgagcgaataaaaaatatgtttgctttccag
aaattcttgaaagatatcatgtcaatcttttcccggtatggattttcacagaaccatgca
atgagactttttaaactttatggattttctgctctgtcgcttttacaggaaaatccatat
tttcttttagatgtgtttccggaacttgactttaaaaaggttgacaggcttgcacttgac
atgggagttatgctggatgacagaagaagaatatctgcaaaaatactcaatcttttgaca
ctggcagcaaatagtgagggacatacctgtctgccagagaataggctcaaacagatttgt
tcaaaaacacttgaccttccagtggaaaaaatagaagaggcgcttgaatctttagctcaa
gaaagaagagttgtaaaagatgaagttgaatctcaaacgatgatatttttgtacggctat
tatgagtgtgaaaggtatatagcagataaaatcctgtcaatgctaaaagaatatgatgac
attgctgatatagatgaaaagatctctctgtttgaagcaaaaaacggcattgcattttcg
ccaaatcaaaagaaagccattaaaatggcgcttactcaaggtgttagcataatcacagga
ggtcctggtacgggaaagaccaccattataaagtgtataattgagatttttgaaggtgcg
gggaaaaaagtttttctctgtgcaccgacaggaagagctgcaaagcggatgcaaacagcc
tgtgaaaaagaagcaaaaacaatacacagacttttagagatgacagtattagatacacat
gttattttccagagagggccaaacaatcctttgaaatgtgatgttgtagttgttgacgaa
atgagtatggtagacagttttcttatgaactatttattgtctgcaataaagccgacaacc
agaattgttcttgtcggagacaaagatcagcttccgtctgttggagctgggaatgtattg
aaagatcttataaaaagtcagattgtaccatgtactattctgtcggatgtttaccgtcag
agcgaaaatagttttatagttttaaatgcgcacaggataaacaaaggagagtttccgtat
cttcaaaaggagagcgatttttattttatccagaaaaattctcaggaagagattttaaaa
actgtggttgagcttgtaaccaaaaaacttccaaactatctttcgtgcgaccctatgaca
gacattcaagttctttgtccgtctaaaaaagggcttgttgggatgtacaacttgaaccgg
gtgctgcaacagtatttgaatccgccttcttctcataaaagagaatatgtttttaaagaa
aacctgttcagggttggagacagggtaatgcaggtgaaaaacaattattcgctggaatat
gaagttatacaaggagaagagaagggcaggagctcaacaggaatattcaacggtgatatt
ggagttgttaaggacatagacagagtacagggtgtgctggagatcctgtttgacgacgaa
aaacttgtatattatgacttttcgcttttagacgatctggagcttgcatatgcaatgact
gttcacaaatcgcaggggtctgagttcaggtgcgtggtaatgcccattgttgagacctac
cccattttgatgacaagaaaccttctttacactgctgtaacacgggcaaaagaacttgtt
gtgctggtgggtaaaaaaagtgctttagagtacatgatagcaaaccagaaagaggctatg
cgatattcagcactttgcgactttttattgcgcgggcaagaaaatatgcaattgcgagct
ttataa
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