Cupriavidus oxalaticus: E0W60_18015
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Entry
E0W60_18015 CDS
T06004
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cox
Cupriavidus oxalaticus
Pathway
cox02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E0W60_18015 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cox03021
]
E0W60_18015 (rpoD)
Transcription machinery [BR:
cox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E0W60_18015 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
SPO22
DUF4238
GerE
Sigma70_r4_2
DUF4125
Motif
Other DBs
NCBI-ProteinID:
QBY53027
UniProt:
A0A4P7LK21
LinkDB
All DBs
Position
2:complement(1553364..1555337)
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AA seq
657 aa
AA seq
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MTSGAQRTAAKSRDAGAIKGLGQTPGGSAAQLDPSAEAAARSQQLRALIQLGKQRGYLTH
ADISDHLPENFADTAAMESIVNTFAEMGVKIYEQTPDAETLLLSDGPVVASDDQAEEEAE
VALSTVDSEFGRTTDPVRMYMREMSSATLLTRKQEVELAKRIEDGLNNMIHAVSACPSTI
ATILELSERVSANEMAIDDLVDGLSDESSAEAAAAPAADDEVEDTSVSADDEDGDEDDAD
EGSSQQGGADTDSAQLREECLKRFARVAAQFEVMRSEEATDGTQSQAFLAARDTVREELR
TIRFTAKTIERLCADVQSMVDAVRAVERQVLQLLVERCGMPREDVVARFPGNETNLAWGQ
ELAAENRPYSAAVARALPDLESHQQKLIDIQARATLSLAELKSVNRKMLAAERQMRQAKH
EMTQANLRLVISIAKKYTNRGLLFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQ
AVTRAIADQARTIRVPVHMIEQINKLNRLSREIMQQTGKEPDPAVLAERMDMPEEKIRSI
MKIAKEPVSMETPVGEDGDTSLGDMIADSDNATPADAALQAGLRAVVREMLDELTPREAK
VLRMRFGIDMASDHTLEEVGKQFDVTRERIRQIESKAMKKLKHPSRADRLMTYLRDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcggcgcacaacgtacggcagccaaatcacgagatgcaggagcgatcaagggc
ctaggccagacccccggcgggtctgcggcacagctcgatccctcggccgaggctgccgcg
cgtagccagcaattgcgcgccctgatccagctgggcaagcagcgcgggtacctgacccac
gccgacatcagcgaccacctgccggagaatttcgccgatacggcggcgatggaaagcatc
gtcaacacgttcgccgaaatgggcgtgaagatctacgagcagaccccggacgccgaaacg
ctgttgctgagcgacggcccggtggtcgcctccgacgaccaggccgaggaagaggccgag
gtggcgctgtccaccgtcgactccgaattcggccgcaccaccgacccggtgcgcatgtac
atgcgcgagatgagctcggccacgctgctgacgcgcaagcaggaagtggagctggccaag
cgcatcgaggacggcctgaacaacatgatccacgcggtctcggcgtgcccgtcgacgatc
gccacgatcctggagctgtccgagcgcgtgtccgccaacgagatggcgatcgacgacctg
gtcgacggcctgagcgacgagagcagcgcggaagccgccgcggcccccgccgccgacgat
gaggtcgaagacaccagcgtcagcgccgacgacgaagacggcgatgaagacgatgccgac
gaaggctcgtcccagcagggcggtgccgataccgactcggcgcagctgcgcgaggaatgc
ctgaagcggttcgcgcgcgtggccgcgcaattcgaagtcatgcgcagcgaagaggcgacg
gacggcacccagtcgcaggccttcctcgccgcacgggacacggtgcgcgaagaactgcgc
acgatccgcttcaccgccaagaccatcgagcgcctgtgcgccgacgtgcagtcgatggtc
gatgccgtgcgcgccgtcgagcgccaggtgctgcagttgctggtcgagcgctgcggcatg
ccgcgcgaggacgtcgtggcccgtttcccgggcaacgaaaccaacctcgcctggggccag
gaactggcggcggaaaaccgcccgtacagcgccgcggtggcgcgcgccctgcccgacctg
gaatcgcaccagcagaagctgatcgacatccaggcccgcgccacgctgtcgctggccgag
ctgaagtcggtcaaccgcaagatgctggccgccgagcgccagatgcgccaggccaagcac
gagatgacgcaggccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgc
ggcctgctgttcctggacctgatccaggaaggcaatatcggcctgatgaaggcggtggac
aagttcgagtaccgccgcggctggaaattctccacctacgcgacctggtgggtgcgccag
gccgtcacgcgcgccatcgccgaccaggcccggaccatccgcgtgccggtgcacatgatc
gagcagatcaacaagctcaaccgcctgtcgcgcgagatcatgcagcagaccggcaaggag
ccggatccggccgtgctggccgagcgcatggacatgccggaagagaagatccgctcgatc
atgaagatcgccaaggagccggtgtcgatggaaacgccggtgggcgaggacggcgacacc
agcctgggcgacatgatcgccgactcggacaacgccacgccggccgatgccgcgctgcag
gcgggcctgcgcgcggtcgtgcgcgagatgctggacgagctgaccccgcgcgaagccaag
gtgctgcgcatgcgcttcggcatcgacatggccagcgaccatacgctcgaagaagtcggc
aagcagttcgacgtcacgcgcgaacggatccgccagatcgaaagcaaggccatgaagaag
ctcaagcacccgagccgcgccgaccggctgatgacctacctgcgggacgcctga
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