Cupriavidus oxalaticus: E0W60_21430
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Entry
E0W60_21430 CDS
T06004
Name
(GenBank) ATP-dependent exonuclease
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
cox
Cupriavidus oxalaticus
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cox03400
]
E0W60_21430
Enzymes [BR:
cox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0W60_21430
DNA repair and recombination proteins [BR:
cox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
E0W60_21430
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBY54935
UniProt:
A0A4P7LGQ6
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Position
2:complement(2294102..2297665)
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AA seq
1187 aa
AA seq
DB search
MSEAEFTRAACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEE
MRDRLLEVLAQLSRDPDDDVIAALVQRGLSPEAAREALPRARRLHAQVLAAPGRMAIDTF
HGWFGTLLRGAPLASGIVPGASLREDALRMKREAWAPVWRALATPQYEDLRAAWETLVDT
VGDFQARALLDAMFHARSEWWAMQEGGSPLQALSDCLGEDAQGDVLLQALADEGWRDACE
TLALRLGGGGKTEQTHATRITDALMAITAWREAGAAPGKAAERVFAQLRAAFFTTTGEPR
SLRRTNALVKAAGGEGMVDTLLDQHASICAMLDEISARCCEAAVLAINQALFCIGDALLT
RYQQHKQEQRAMDFADLEWQAAQLMSDEETATYLQVRLDARYRHLLLDEFQDTNPLQWRI
LQGWLAGYAGLGERPTVFLVGDPKQSIYRFRRADARLFGAAGEMLRDAFGATVLRTNRTR
RNRAEVLEWVNAVFDAARAEGRYPLYETQTSALAEGGGPVWLLPLVEAEEKAEGKAGDSE
ASETEAQAGDGAMHRDTLLQPRRQAGDSLRLEEGRRVAAWLRHVRDTVPVHENGATRPAR
WSDMHLLVRRKTHLADYERALREGGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLD
LAHVLKSPLVGATDDDLLALAQLEGEGGWWARIEASGLPGHVSDALREGVPRLRQWLRVA
PHQPVHDLIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFI
DELQEIRRGDEGESPDEGGMGDNAEDVEPAEDDAAFAGLDAVHILTVHAAKGLEAPFVVL
LDANHSDPAADKGGILVDWPPSSPVPRHFSAYGKRSERGLARAPMFEAEAALGERENWNL
LYVAMTRAQQGLLVSGVKGRASRAAAGENNAEIAGSWYVWLQGAGVGEMLPAYPGQPEQA
GDSEAPVLARLSEPVRFTDFRLRYRDAGALPSFEDDARAEEGPSADDGIVFNAAAARHGE
LVHALLERLTRYPEAFAGIPDIDTVLRWFPLTGAHTVEARQAWREQVDEALAAVRAMLGA
PALAPLLSSDEAGSARNEVELYDARGRLLRIDRLVEFDDRVVIVDYKLRLLPQEHAAYRA
QLGRYVAAVAPLFPGKRIEAGVATADGQWIPAERLAPPMLTQQGSLF
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaggccgagttcacccgcgcggcctgcgatcctgcgcgctccgtcgtggtcgag
gcctgcgccggcagcggcaagacctggctgctggtggcgcgcctggtgcgcctgctgctg
gccggcgccgcgccgcacgagatcctcgcgatcaccttcacgcgcaaggctgccgaagaa
atgcgcgaccgcctgctggaagtgctggcgcaactgtcgcgcgatcccgacgacgacgtc
atcgccgcgctggtgcagcgcggcctgagcccggaggccgcccgtgaggcgctgccgcgc
gcgcgccgcttgcacgcgcaggtgctggccgcgcccgggcgcatggccatcgataccttc
cacggctggttcggcacgctgctgcgcggcgcgccgctggcgtcgggcatcgtgcccggc
gcgtcgctgcgcgaagatgcgttgcgcatgaagcgtgaagcgtgggcgccggtctggcgc
gcgctggccacgccgcaatacgaagacctgcgcgccgcatgggaaacgctggtcgacacc
gtgggggacttccaggcgcgcgcgctgctcgacgccatgttccacgcccgcagcgaatgg
tgggcgatgcaggagggcggcagcccgctgcaggcgctgtccgactgccttggtgaagac
gcccagggcgacgtgctgctgcaggcgctggccgacgaaggctggcgcgatgcctgcgag
acgctggcactgcgcctgggcggcggcggcaagaccgagcagacccatgccacgcgcatc
accgacgcgctgatggccattactgcctggcgcgaagccggcgcggcgccgggcaaggcc
gccgaacgcgtgttcgcacaattgcgcgcggcgttcttcaccaccacgggcgagccgcgc
tcgctgcgccggaccaacgccctcgtcaaggccgcgggaggcgagggcatggtcgatacg
ctgctcgaccagcatgcttccatctgcgcgatgctcgacgagatcagcgcccgctgctgc
gaggccgcggtgctcgccatcaaccaggcgctgttctgcatcggcgacgcgttgctgacg
cgctaccagcagcacaagcaggaacagcgcgcgatggacttcgccgacctcgaatggcag
gccgcgcagctgatgtccgacgaagagaccgcgacctacctgcaggtgcggctcgatgcg
cgctaccgccacctgctgctcgacgaattccaggacaccaacccgctgcagtggcgcatc
ctgcagggctggctggctggctacgcaggcctgggcgagcgcccgacggtgttccttgtg
ggcgatcccaagcagtcgatctaccgcttccgccgcgccgacgcgcgcctgttcggcgct
gccggcgagatgctgcgcgacgcgttcggggcgacggtgctgcgcaccaaccgcacccgg
cgcaatcgcgccgaggtgctggagtgggtcaatgccgtgttcgacgcggcgcgcgcggaa
gggcgctacccgctgtacgagacgcagacctcggcgctggccgaaggcggcggtccggtg
tggctgctgccgctggtagaggccgaagagaaagccgaaggcaaggcgggcgacagcgaa
gcgagcgagacggaagcgcaggccggcgacggcgccatgcaccgcgacacgctgctgcag
ccgcgccggcaggccggcgattcgctgcgcctggaggaaggccggcgtgtggccgcgtgg
ctgcgccatgtgcgcgacaccgtgccggtccacgagaacggcgccacgcgccccgcccgc
tggagcgacatgcacctgctggtgcgccgcaagacccatctcgccgactacgagcgcgcg
ctgcgcgagggaggcatcccatgcctgagcccgcgccgcggcggcctgctggccacgctg
gaagcgctggacctgtcggccttgctggccttcctgatgacaccggagtccgatctcgat
ctcgcccatgtgctcaagagcccgctggtcggcgcgaccgacgatgacctgctggccctg
gcgcagctggaaggcgagggcggctggtgggcgcgcatcgaagccagcggcctgcccggg
cacgtctcggacgcattgcgcgaaggcgtgccgcggctgcgccagtggctgcgcgtcgcg
ccgcaccagccggtgcacgacctgatcgaccagatcttccacggcggcgaagtccggcgc
cgttatgccgaagccgcgccgccggatatccgcgagcaggtgctggccaatcttgatgcc
ttcctgaagctgtcgctggatctggacggcggccgttacccgagcctgcccaagttcatc
gacgagctgcaggagatccgccgtggcgacgagggcgagagccccgacgaaggcggcatg
ggcgacaacgccgaagacgtcgaaccggcggaggacgatgccgcctttgccggcctcgac
gcagttcacatcctgaccgtgcatgcggccaagggcctggaggcgccgttcgtggtgctt
ctcgatgccaaccacagcgatcccgccgcggacaagggcgggatcctggtcgactggccg
ccgtcgtcgccggtgccgcggcatttctcggcgtatggcaagcgcagcgaacgcggactg
gcgcgcgcgccgatgttcgaggccgaggctgcgctgggcgagcgggagaattggaacctg
ctctacgtcgccatgacgcgggcgcagcagggcctgctggtcagcggcgtgaagggccgc
gccagtcgcgccgccgccggcgagaacaacgcggaaatcgccggcagctggtacgtgtgg
ctgcagggcgcgggcgtgggcgagatgttgcccgcgtacccagggcaaccggaacaagcg
ggcgacagcgaggcgccagtactggcacgcctgagcgagccggtgcgcttcaccgacttc
cgcctgcgctaccgcgacgccggggcgctgccatcgttcgaggacgacgcgcgggccgag
gagggtccgtcggcagacgacggcatcgtcttcaacgccgcggcagcccgccacggcgaa
ctggtgcacgccctgctggagcggctgacgcgctatccggaagcctttgccggcattccg
gacatcgacacggtgctgcgctggttcccgctcaccggcgcgcataccgtcgaggcacgg
caagcgtggcgcgagcaggtagatgaagcgctcgcggcggtgcgcgcgatgctgggcgcg
ccggcgctggcgccactgctgtcgtcggacgaggccggcagcgcgcgcaatgaagtcgag
ctgtatgacgcgcgcggccggctgctgcgcatcgaccggctggtcgagttcgacgaccgc
gtcgtcatcgtcgactacaagctgaggctgctgccgcaggagcacgccgcctatcgcgcg
cagctggggcgctacgtggcggcggtcgcgccgctgttcccgggcaagcgcatcgaggcc
ggcgtggccactgccgacggccagtggattcccgccgagcggctggcgccgccgatgctg
acgcagcagggttcgctattctga
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