Cupriavidus oxalaticus: E0W60_22865
Help
Entry
E0W60_22865 CDS
T06004
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cox
Cupriavidus oxalaticus
Pathway
cox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E0W60_22865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cox03019
]
E0W60_22865
Enzymes [BR:
cox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E0W60_22865
Messenger RNA biogenesis [BR:
cox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E0W60_22865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
HEM4
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QBY53885
UniProt:
A0A4P7LE07
LinkDB
All DBs
Position
2:complement(2596028..2597584)
Genome browser
AA seq
518 aa
AA seq
DB search
MSSRRVSVCAGFASRQTPIPMTTTTAPEPTTAGQTAVQTFESFGLDARILRALSDQGYTT
PTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASASPARHPVRALML
TPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQ
QKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSATFSPEIKRLAASY
LKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVVHLLKQRAEQSQSRQCIVFVNSKIG
CSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGTIDALVATDVAARGLDIPDMPCV
INFDLPFSAEDYVHRIGRTGRAGASGDALSIYVPGNDERLLSDIEKLIKRSIPRGKLEGF
DPTGEKSRQDEAERRRQRGDLRRARGSGDEERPRRHEHSGSRQVFRPSDDPFFSRPYEPS
ASSSQVKPSEEIAAALSRGRQAPKRPVAALLGGVPRKS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgagttccagacgcgtatccgtttgtgccgggttcgcctcccgccagacaccgataccc
atgaccactacgaccgcaccagaacccaccaccgccgggcagaccgcggtgcagaccttc
gaaagctttggcctggacgcgcgcatcctgcgtgccttgtccgaccagggctacaccacg
cccacgccgatccaggcacaggccattcccgtcgtgctgctcggcaaggacgtgatgggc
gccgcgcagaccggcaccggcaagaccgccggcttcgcgctgccgatcatccagcgcctg
ttgccgctggccaatgccagcgcctcgccggcgcgccatccggtgcgcgcgctgatgctg
acgcccacgcgcgaactggccgaccaggtctacgacaacgtcgcccgctacgccaagcac
accgacctgcgcagcacggtggtgttcggcggcgttgacatgaatccgcagaccgacgcc
ctgcgccgcggcgtcgagatcctggtggccacgccgggccgcctgctcgaccacgtgcag
cagaagtcggtcaacctgtcgcaggtgcagatgctggtgctggacgaagccgaccgcatg
ctcgacatgggcttcctgccggacctgcagcgcatcatcaacctgctgccggcacagcgc
cagacgctgctgttctcggccacgttctcgccggaaatcaagcggctggccgccagctac
ctgaagcagccggtcaccatcgaagtggcgcgcagcaactcgaccaacgagaacgtgcgc
caggcggtgtaccaggtcgaggacggccacaagcaggccgcggtggtgcacctgctcaag
cagcgcgccgagcagtcgcagtcgcgccagtgcatcgtcttcgtcaacagcaagatcggc
tgctcgcggctggcgcggcacctggagcgcgagggcatcaacgccgccgcgatccatggt
gacaagacccagaccgagcgcatgcagacgctggacggcttcaagagcggcaccatcgat
gcgctggtcgccaccgacgtggcggcgcgcgggctcgatatccccgacatgccatgcgtg
atcaacttcgacctgccgttcagcgccgaggactacgtgcaccgtatcggccgcaccggc
cgtgccggcgccagcggcgatgcgctgtcgatctacgtgccgggcaacgatgagcgcctg
ttgtccgatatcgagaagctgatcaagcgcagcattccgcgcggcaagctggagggcttt
gacccgaccggcgagaagtcgcgccaggacgaggcagagcgccgccgccagcgcggcgac
ctgcgccgtgcgcgcggcagcggcgacgaggagcggccgcgccgccacgagcacagcggc
agccgccaggtgttccgcccttccgacgatccgttcttctcgcgcccgtacgagcccagc
gcaagcagctcgcaggtcaagccgtcggaggaaatcgccgccgcgctgagccgtggccgc
caggcgcccaagcgcccggtcgcggcgctgctgggcggcgtgccgcgcaagtcctga
DBGET
integrated database retrieval system
