Cupriavidus oxalaticus: E0W60_26645
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Entry
E0W60_26645 CDS
T06004
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cox
Cupriavidus oxalaticus
Pathway
cox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E0W60_26645 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cox03021
]
E0W60_26645 (rpoC)
03400 DNA repair and recombination proteins [BR:
cox03400
]
E0W60_26645 (rpoC)
Enzymes [BR:
cox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E0W60_26645 (rpoC)
Transcription machinery [BR:
cox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E0W60_26645 (rpoC)
DNA repair and recombination proteins [BR:
cox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E0W60_26645 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBY54566
UniProt:
A0A4P7LEK7
LinkDB
All DBs
Position
2:complement(3415786..3420033)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYLAKCDEYGEGEFVAM
MGAEGIRELLRGIDIEKQIEQIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL
EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP
TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGRGEGMTFADISEVIRAYEN
KEVELASRVNVRITEYELVDKDAEGDARFAPKITLQATTVGRAILSEILPKGLPFSVLNK
PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII
AEASAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDRDGKTV
KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA
LRDRILGRVTVADVVNPETQETAIESGTLLDEDLVELIDNIGVDEVKVRTPLSCDTRYGL
CAKCYGRDLGRGVMVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA
TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA
GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG
IRPQVKLLDANGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLIAKEK
QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA
SERERAQAIAEEEQSLFIEPPPVVQATTEGEGDNA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatctctttaagcaggtacagcaggaagagcagttcgacgcgatc
aagatcggcctggcctcgcccgagaagatccgttcgtggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgtacgttcaagccggaacgcgacggcttgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggccgcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgacatcgagcgcgtactgtac
ttcgaagcattcgtggtgctcgagcccggcatgaccccgctcaagaagagccagatcatg
tcggaagacgactacctggcgaagtgcgacgagtacggcgagggcgagttcgtcgccatg
atgggtgccgagggcatccgtgaactgctgcgcggcatcgacatcgagaagcagatcgaa
cagatccgcgccgagctgcaggccaccggttccgaagccaagatcaagaaattcgccaag
cgcctgaaggtgctcgaggccttccagcgttcgggcatcaagcccgagtggatgatcctc
gaagtgctgccggtgctgccgcccgagctgcgtccgctggtgccgctggacggcggccgc
ttcgcgacctcggacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgcctg
aagcgcctgctggagctgaaggcgcctgagatcatcgtgcgcaacgaaaagcgcatgctg
caggaagcggttgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgcc
aacaagcgtccgctgaagtccctggccgaaatgatcaagggcaagggcggccgtttccgt
cagaacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccg
acgctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccc
ttcatcttccacaagctggaaacgatgggcatcgccaccaccatcaaggcggcgaagaag
gaagtcgaaagccagaccccggtggtgtgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgggcgccgacgctgcaccgcctgggtatccaggcgttcgagccg
gtgctgatcgaaggcaaggccatccagctgcacccgctggtctgcgcggcgttcaacgct
gacttcgacggtgaccagatggctgtccacgtcccgctgtcgctggaagcgcagatggaa
gcccgcaccctgatgctggcctccaacaacgtgctgttcccggccaacggcgacccgtcg
atcgtgccgtcgcaagacgtggtgctgggtctgtactacacgacccgcgacaagatcaac
ggccgcggcgagggcatgacctttgccgacatcagcgaagtgatccgcgcctacgagaac
aaggaagtcgagctggcttcccgcgtgaacgtgcgtatcaccgagtatgagcttgtcgac
aaggacgccgaaggcgacgcccgtttcgcacccaagatcacgctgcaggccaccacggtc
ggccgcgcgatcctgtccgagatcctgccgaagggcctgccgttctcggtgctgaacaag
ccgctcaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggcctg
cgcgagaccgtgatcttcgccgacaagctgctgcagtcgggcttccgcctggcaacccgc
gccggtatctcgatcgcgatcgacgacatgctggtgccgcccgccaaggagaagatcatc
gccgaggcctcggccaaggtgaaggaatacgacaagcagtacatgtcgggtctggtgacc
gaccaggaacgctacaacaacgtcgtggacatctggggcgccgccggcgaccaggtgggc
aaggcgatgatggagcagctccagcacgaagacgtggtcgaccgcgatggcaagaccgtg
aagcaagagtcgttcaactccatctacatgatggccgactcgggcgcacggggttccgcg
gcgcagatccgccagctggccggtatgcgtggcctgatggccaagccggatggctcgatc
attgaaacgccgattacggcgaacttccgtgaaggcctgaacgttctgcagtacttcatc
tcgacccacggtgcccgtaagggtctggcggatacggcactgaagaccgcgaactcgggt
tacctgacccgtcgtctggtcgacgtgacccaggatctggtcgtggtggaagacgattgc
ggcacctccaacggcgtggccatgaaggccctggtcgaaggcggtgaagtgatcgaagcc
ctgcgcgaccgtatcctcggccgtgtgaccgtggccgacgtggtgaacccggaaacccag
gaaaccgcgatcgaatccggcacgctgctggacgaagacctggtcgagctgatcgacaac
atcggcgtggacgaagtcaaggtccgcaccccgctgtcgtgcgacacgcgctacggcctg
tgcgccaagtgctacggccgcgacctcggccgcggcgtgatggtgaactccggcgaagcg
gttggcgtgattgccgcccagtcgatcggtgagccgggcacgcagctgaccatgcgtacg
ttccacatcggtggtgcggcatcgcgtgcggcggtggcatcgagcgtggaagcgaaggca
accggtaccgtgcgtttcacggcgaccatgcgctacgtcaccaatgcgaagggcgaactg
atcgtcatctcgcgttcgggcgaggcgctgatcaccgacgaccacggccgcgagcgcgag
cgccacaagatcccgtacggcgcgacgctgctggtgcaggacggccaggccatcaaggct
ggcacgcagctggccacgtgggatgcactgactcgcccgatcgtctcggaatacaccggt
acgacgaagttcgagaacgtcgaagaaggcgtgaccgtcgccaagcagatggacgaagtg
accggcctgtcgaccctggtggtgatcgacgccaagcgccgcacggctgcaaccaagggc
atccgcccgcaggtgaagctgctcgacgccaacggccaggaagtgaagatcccgggcacg
gaccactccgtgaccatcggcttccaggtcggcgcgctgattaccgtgaaggacggccag
caggtgcacgtgggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacccgcgac
attaccggtggtctgccgcgtgtggccgagctgttcgaagcgcgttcgccgaaggacgcc
gccgtgctggcggaagtcacgggcacgacctcgttcggcaaggacaccaagggcaagcag
cgcctggtcatcactgacctggacggcaatgcccacgagttcttgatcgctaaggaaaag
caggtgctggtgcacgacggccaggtggtgaacaagggcgaaatgatcgtggaaggtccg
gcggacccgcacgacatcctgcgcctgaagggcatcgaagagctggcgcactacatcgtg
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcgccgatgtgggcgacaccaagttc
atcccgggtgaacaggtggagcgctcggaactgctcgacgagaacgaccgcgtgatcgcc
gaaggcaagcgtccggcaacctacgagaacctgctgctgggtattaccaaggcgtcgctg
tcgaccgacagcttcatctcggcggcatcgttccaggaaaccacgcgcgtgctgaccgaa
gccgcgatcatgggcaagaccgatgacctgcgtggtctgaaggaaaacgtgatcgtgggt
cgtctgatcccggccggtaccggcctggcctaccaccgtgcccgcaaggcgcgcgaggcc
tccgagcgcgaacgcgcccaggcgatcgccgaagaagagcagtcgctcttcatcgagccg
ccgccggtggtgcaggcgacgaccgagggtgaaggcgacaacgcctga
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integrated database retrieval system
