KEGG   Cupriavidus oxalaticus: E0W60_36095
Entry
E0W60_36095       CDS       T06004                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cox  Cupriavidus oxalaticus
Pathway
cox03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cox00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E0W60_36095 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cox03400]
    E0W60_36095 (ligD)
Enzymes [BR:cox01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E0W60_36095 (ligD)
DNA repair and recombination proteins [BR:cox03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E0W60_36095 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QBY56422
UniProt: A0A4V1BZT3
LinkDB
Position
unnamed4:317892..320417
AA seq 841 aa
MATTRGTSKAKRRTEKPPSAKLERYQKKRNFSITPEPAGAPRRRKKAESLRFVIQKHWAR
RLHYDFRLELDGVLLSWAVPKGPCYDPSEKRMAVHTEDHPLDYASFEGEIPAKQYGAGSV
IVWDRGTWEPVGDPREGMAAGKLLFDLYGEKLAGRWELVRIAKPGDKSEQWILFKKRDAW
ARTLAEFDVLAAFPDSVIAKPLGPLTQASLSPTKIDSNVTMHDAPLAPLPAKLAPQLATL
SPTLPADTGWIIETKFDGYRMLARIEDAHVTLFTRNGHDWTLKLKSLAAEIEKLDISEGW
LDGEIVVLRDGVPDFNALQNAIDCHRNDAIVFFAFDLPFWEGRDLRNLPLVQRRAKLSEL
VSDQSERVRFSEAFDAPPAQIFQAACKLGLEGLMFKRADATYVSARSQTWLKAKCKLRQE
FVIGGFSDRSGAAKEVGKLYLGVYAEGELRYAGGVGTGWDSGTAVDLKKRLTAIEIEQSP
FSTEARSSRRWGGGRAAAMRWVKPTLVAEVEFSEWTPEGHVRHASFKGLRADHPANSIRQ
EAVQTVVTPHGTSAIKVSNPDRVIDKSKGITKVELVRYYESVAEFMLPHLLDRPLSLVRA
PEGIDAQTFFQKHAETAMPGLTEHPSSLWPGHAALLTADSPAAIVAAAQMNVVEFHTWNS
TAGKIDRPDRVIFDLDPGEGVPWDTMREAAVLVRTLLDELGLQSWLKTSGGKGLHVVVPL
APRRSYDEVKAFSRAAVQHLAATLPQRFTARSGAANRKGRIFVDYLRNGFSQTTAAAFSA
RARPGLGVSMPVSWDQLAKLKSGDQWTIRDAREYLSFQVVDPWASYWETRQVLTAAIKRL
G
NT seq 2526 nt   +upstreamnt  +downstreamnt
atggcaacgacccgcgggacgtcaaaggctaagcgccgtacggagaagccgccatctgcg
aaactggagcggtatcaaaagaagcgcaacttcagcatcacgcccgagccggcgggagcg
cctcgacgtcgcaagaaagccgagtcgttacgcttcgtgatccagaagcattgggcccgt
cgactccactatgatttccggctggaactcgatggcgtgctgctcagctgggccgtgccc
aagggcccctgctacgatcccagcgaaaagcgtatggcggtccataccgaggaccatccg
cttgactatgccagctttgagggtgagattccggccaaacagtatggcgccggctcggtc
atcgtctgggatcgtggcacatgggagccggtcggtgacccgcgcgaggggatggcggcg
ggcaagctgctgttcgacctgtacggcgagaagctggcgggccgttgggaactggtccgc
atcgccaagcctggcgacaagtccgagcagtggattctcttcaagaagcgagacgcctgg
gcacgaaccttggcggagttcgacgtgttggccgcattcccggacagcgtcatcgccaag
ccgctcgggccgctgacccaggcgtcgctgagcccgaccaaaatcgattccaacgtgacg
atgcacgacgcgccgctcgcgcccttgccggcgaagctggccccccagcttgccactttg
tcgcccacactgcctgccgataccggctggatcatcgaaacgaagttcgatggatatcgg
atgctagccaggatcgaagacgcccacgtgactctcttcacgcgcaatggtcatgactgg
acgctcaagctgaaatccctcgcggccgagatcgaaaagctcgacatctcggaaggatgg
ctcgatggcgagatcgtggtgcttcgcgatggcgtgcccgatttcaatgcgctgcagaat
gccatcgactgtcatcgcaacgacgcgattgtcttcttcgccttcgatctccccttctgg
gaaggtcgcgatttacgcaatttgccgttggtgcagcggcgggcgaagctctcggagctg
gtcagtgatcagtcggagcgcgtgcgcttcagcgaggccttcgatgcgccaccggcacag
atcttccaggcggcgtgcaagctcggcctcgagggcttgatgttcaagcgtgcggacgcc
acctatgtttccgcgcggtcccagacctggctcaaggccaaatgcaagctgcgtcaggag
ttcgtgatcggcgggttctccgaccgcagcggggcggccaaagaagttggcaagctctat
cttggcgtgtacgcggagggagagctccggtacgccggcggggttggcaccggctgggac
agtgggacggccgtggacctgaagaagcgcttgacggcgattgaaatcgagcaaagcccg
ttttccacggaggcgcgctccagccgccgctggggcggcggccgtgcggccgcgatgcgc
tgggtgaagccaacgctcgttgctgaggtggagttctccgagtggacccccgaggggcat
gtccgccatgcgtcgttcaaaggtctgcgcgccgatcatcccgccaattcgatccgtcaa
gaggctgtccagaccgttgtgacgccccacggcaccagcgccatcaaggttagcaaccct
gaccgtgtcatcgacaagtccaaaggcatcacgaaggtcgagctggttcgctactacgaa
agcgtggccgagttcatgcttccccacctcctggatcggccgttgtcgctggtgcgcgcg
cccgaagggatagatgcccagaccttctttcagaagcatgcggaaacggcaatgcctggc
ctgaccgaacacccctcctccctctggcctggccatgcggcgctgctcacggcggattca
cccgcggcgattgtcgcggctgcgcaaatgaatgtggtcgagttccacacctggaattcc
actgccggcaagatagaccgtccagaccgggtcatctttgacctggaccccggcgaaggc
gtaccttgggacaccatgcgcgaagcagccgtcctggtgcgcacgctgctggatgagctg
ggcctgcagtcctggttgaagaccagtggcggcaaaggcctgcacgtcgtggtgccatta
gcaccgaggcggtcttacgatgaagtaaaggcgttttctcgcgcagcggtccaacatctc
gctgccacgctgccgcaacgctttactgcccgatcgggagcggccaatcgcaaagggcgg
atcttcgtcgactacttgcgtaatggcttctcgcaaacgactgcggctgctttctcggcg
cgcgcaaggcccggactcggcgtctccatgcctgtttcctgggaccagcttgcaaaattg
aaaagcggcgatcagtggacgattcgcgatgcccgcgagtacctgagtttccaggtggtc
gatccttgggcgtcgtactgggagacgaggcaggtgttgaccgccgcaatcaagcggtta
ggctag

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