KEGG   Chitinophaga oryzae: HF329_01565
Entry
HF329_01565       CDS       T07451                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy  Chitinophaga oryzae
Pathway
coy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:coy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HF329_01565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:coy03021]
    HF329_01565
Transcription machinery [BR:coy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HF329_01565
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_ECF Sigma70_r4 GerE Sigma70_r2 HTH_23 HTH_24 HTH_Tnp_ISL3 HTH_10 PF0610-like_N HTH_28 HTH_5 HTH_AsnC-type HTH_11 HTH_40 HTH_50 HTH_38 DUF722 Lebercilin RNase_R_N CDI_Immunity_Comp HTH_29 HTH_36
Other DBs
NCBI-ProteinID: QJB30064
LinkDB
Position
356434..356991
AA seq 185 aa
MPAYHVYEDSELLDFMKSGNEAAFDEIYHRHWHTLYHAAYYLLQEEAPAMDIVQDVFVWF
WEHRDHLVLTTLRGYLLMAVRYKAANYFRRRKVRTAFAAETAMQAREEGALDHALELKEL
KAVIAHFTATLPDRCREVFQLSRQDHLSNREIARQLGISEKTVENQLTIALKKLRVRLGS
MSLLM
NT seq 558 nt   +upstreamnt  +downstreamnt
atgcccgcttaccacgtatacgaggacagtgaactgcttgactttatgaagtcgggcaat
gaagccgcatttgatgaaatctaccaccgccactggcataccctctatcacgccgcctat
tacctgttgcaggaagaagcgcccgctatggacatcgtacaggacgtattcgtctggttc
tgggaacatcgcgaccacctggtgctgaccaccctgcgggggtatctcctgatggcggta
cgttataaagccgccaactatttccgccgccggaaagtacgcaccgcctttgccgcagaa
acagccatgcaggcccgtgaagaaggcgccctcgaccacgcgctggaactgaaagaactg
aaagccgtgatcgctcacttcaccgccacactgcccgaccgctgccgggaagtattccaa
ctgagccggcaggaccacttgtcgaaccgtgaaatcgcccgtcaactgggcatttcggag
aaaacggtggaaaaccaactgacgattgcattgaagaaattaagagtaagactgggaagt
atgagtttgttgatgtga

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