Chitinophaga oryzae: HF329_10520
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Entry
HF329_10520 CDS
T07451
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
coy
Chitinophaga oryzae
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
coy03016
]
HF329_10520
Enzymes [BR:
coy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HF329_10520
Transfer RNA biogenesis [BR:
coy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HF329_10520
Prokaryotic type
tRNA splicing ligases
HF329_10520
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Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QJB31725
UniProt:
A0AAE7D6H1
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All DBs
Position
complement(2635198..2636328)
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AA seq
376 aa
AA seq
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MRSIAFYCDAHSVERNAMDQLQQYSQKPFVDGISAFTDIHYCAEKALPVGVAFKTSDYFY
PLITGKDIGCGVMYLKTDKQHWLRPFDKDAHYRAFAQAHTQMTDDGLGGGNHFLSIEEDN
DAVYIICHTGTRDRGIALYQHCIQLTRDFSQAYGREVDYVHRDFVQPDFFRYYQDILQFG
YERRKNFCVKTMIFLQNANYLKCNKGAIDKGYLQRNYKDLGDEGVLYGTPYQLEDSIHNH
LRFSDKEIMHRKGSTELQQGRTVVIPLSMSRGSLLAKAGYLPGAAEALYSCSHGAGRRLS
RFEAMKYWKTVLKEKQRRAYKEQFSELLDRSGNFPSGYIQEFDFAYKDASDVFRYQPYLQ
KVTQTTPVVTVKYTEI
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgcgatctattgcattctattgtgatgcacatagtgttgagcgcaacgctatggatcag
ttgcagcagtactcccaaaaaccgtttgtagacggcatcagcgcgtttacggatattcac
tattgcgccgagaaggccctgccggtaggcgtggcatttaaaaccagcgattatttctac
ccgttgatcaccggtaaggatatcgggtgcggcgtgatgtatcttaaaaccgataaacag
cactggctgcggccattcgataaagatgcccactaccgggcgtttgcacaggcccacacc
cagatgaccgacgacggtctgggtggcggtaaccatttcctctccatagaggaagataac
gacgccgtatatattatatgccataccggtacgcgggacaggggcattgccctgtatcag
cactgtatacagctgacccgcgatttctcgcaggcatacggccgggaggtggactatgtg
catcgtgattttgtacagccggattttttccggtactaccaggacatcctgcaattcgga
tacgaaaggcgtaaaaatttctgtgtgaagactatgatctttttacagaacgccaattat
ctgaaatgtaacaagggcgctatcgacaagggctacctgcagcgcaactacaaagacctg
ggcgacgaaggcgtgttgtatggaacaccgtatcaactggaagattccattcacaatcac
ctgcggttctccgacaaggagatcatgcaccgcaaaggcagcacagagctgcagcagggc
aggaccgtggtgatcccgctgtctatgtcccggggcagcctgctggccaaagccggttac
ctgccgggtgcggccgaggcgctgtattcctgctcccatggcgcaggcagacggttatcg
cgttttgaagcgatgaaatactggaaaaccgttttgaaggagaaacaacgcagggcttat
aaggagcagttcagcgagctgctcgaccggtcaggcaattttccctccgggtatatccag
gagtttgatttcgcttacaaggacgcgtcggatgttttccgctaccagccttacctgcaa
aaggtgacacaaacaacaccggtggtgacggttaaatacaccgagatttaa
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