Chitinophaga oryzae: HF329_10990
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Entry
HF329_10990 CDS
T07451
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy
Chitinophaga oryzae
Pathway
coy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF329_10990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coy03021
]
HF329_10990
Transcription machinery [BR:
coy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF329_10990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_28
PhyR_sigma-like
Sigma70_ECF
HTH_30
HTH_10
DUF134
HTH_40
PrmC_N
Toxofilin-like_dom
Bin3
MINDY_DUB
HTH_20
HTH_29
CSTF_C
Motif
Other DBs
NCBI-ProteinID:
QJB31818
LinkDB
All DBs
Position
complement(2741051..2741629)
Genome browser
AA seq
192 aa
AA seq
DB search
MNEQELLKRLAAGDQAAFTAIYLQYHGGIYTYLLKFTKNPLLTEDLVHDVFLKIWEVREQ
LDIKSSFAAYLYRLARNAALTQLNRLTLFDAVRDEVMHRMSLGIHEQSVLNAVEQKQYEE
LLQRAIDNLPPQRREAFILCRQQGKSYEEAAALMNISRNTFKQHLSLAVKSIRDYLLEHG
NISLLMLLIAMK
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacaggaactgctaaagcggctcgccgcaggtgaccaggcggcctttacagcg
atttatctgcaataccacggggggatttatacctacctgttgaaattcaccaaaaatccg
ctgctcacagaagatctggtgcacgatgtgttcctgaaaatctgggaggtccgcgaacag
ctggacattaagtcctcttttgccgcatacctgtaccgcctcgcccgcaatgccgcgctg
acccagctgaacaggctgacgctcttcgatgccgtaagggatgaggtgatgcatcgtatg
tcactgggcatccatgagcagtcggtgctgaacgccgtggaacagaagcagtacgaggag
ctcttgcagcgggctatcgacaacctgccgccgcagcgtcgggaggcgtttatcctctgc
cgccagcagggcaaaagctatgaagaagctgctgcactgatgaatatctcccgtaataca
tttaaacagcacctgtcgctggccgtaaaatccatccgggactacctgctggaacatggc
aatatctccctgctgatgctgctgatagccatgaaataa
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