Chitinophaga oryzae: HF329_13785
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Entry
HF329_13785 CDS
T07451
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03030
DNA replication
coy03430
Mismatch repair
coy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF329_13785 (dnaE)
03430 Mismatch repair
HF329_13785 (dnaE)
03440 Homologous recombination
HF329_13785 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coy03032
]
HF329_13785 (dnaE)
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_13785 (dnaE)
Enzymes [BR:
coy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF329_13785 (dnaE)
DNA replication proteins [BR:
coy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HF329_13785 (dnaE)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HF329_13785 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF655
Motif
Other DBs
NCBI-ProteinID:
QJB32339
UniProt:
A0AAE7D834
LinkDB
All DBs
Position
3634011..3637652
Genome browser
AA seq
1213 aa
AA seq
DB search
MIFSHLHVHTQFSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNKLN
PGDPKDKRLKVKPIVGCEFYLVENRHKRAFTREEKDIRYHQVLLAKDDEGYRNLIKLCSL
GYMEGLYGKYPRIDKELILQYHKGLIATTCCLGASVPKTILRKGEEEGEKEFKWWLDIFG
DDFYVEMQRHGIPEQDQVNYVLLKYAAKYNVKIIASNDSHYVDQADANAHDILLCINTGE
KKSTPTNKEFSDDEAAPKNTRFAFYNDQFYFKTTEEMTALFHDLPQAIDNTNEIVDKVQL
LDLKRDILLPNFPIPKEFLTQDQYLRHLTYEGARTRYREMTADIEERINFELQVIENMGF
AGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRK
SMPDIDTDFDDEGRQKVIDYVVQKYGRNQVAQIITYGTMAAKMSIKDVARVMDLPLVESN
SLAKLVPEKPGIQLDRIFNAPLEGEKSLADKEGLAGEDIENVKRLRELIKGDDLQGEVLR
EACVLEGSVRNTGIHAAGIIIAPQDLYDLIPVSTAKDSDLLVTQFEGSIIESAGVIKMDF
LGLKTLTIIKGALELIRMNHGVEIEIDNIPLDDAKTYELYQKGETNATFQFESPGMQKYL
RELKPDRFDDLIAMNALYRPGPLEYIPSFIRRKHGLEPVTFDLPDMEEHLAETYGICVYQ
EQVMLLSQKLANFSRGDADILRKAMGKKQIAVLNKMKAQFMEGCATHGYDLKVCEKVWTD
WEAFASYAFNKSHATCYAFVAYQTAYLKAHYPSEYMASVLNCASNIEKITFFMEECKRMG
IDVLPPDVNESLKGFAVNKQGHIRFGLGGLKGVGEAAVENLLEERKKDGPFKNVFDFIKR
VNQRAVNKKSLEALIMSGAFDCFPEFHRAQYFHKPENEPMNGLDRIVKFGQQVSAGSSNI
GSLFGDAEMPDVEPPKIPNCDPWPLIMKLNNERDITGIYISGHPLDDYRFELKHYHMNTV
QELVEYQSEISTPGSNGGRSRERNFRLAVYVTNAQERISRNNRQFGIMTIEDYSGKFEFA
LWSEDFIRFAPYLKPGLCLFINGGFKSKRFNDNEYEFKVNSIQLLQEVKKTHTKQVFLAT
SPKHLNRETVDFLVENVNRFPGSSTLHMQLVDIDNNMQVKLHTFNKNIEMNDELAHFLRK
QPDLDVYIEIINK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgatcttttcccacttacacgtacacacgcaattttcattactggatggtgcagctgat
attaaatcactgtacaaaaaagccatggcctccaatcagccggcactggccatcaccgac
catggaaatatgtttggtgcctttcagttcgtggcagaagcatataataataaactgaac
cccggtgatcccaaggataaaagactcaaagtaaaacccatcgttggctgtgagttctac
ctcgtggaaaaccgccacaaacgtgcttttacacgcgaagaaaaggatatccgttatcac
caggtgttgctggccaaagatgacgaaggttaccgtaacctgatcaaactctgctccctc
ggctatatggaagggctctacggcaaatatccgcgtatcgacaaagagctgatattacaa
taccacaaaggcctgatcgccaccacctgctgccttggcgcctctgtgcccaagaccatc
ctgcgcaagggagaagaggaaggtgaaaaggaatttaaatggtggctcgatattttcggg
gacgacttctacgtggagatgcaacgccatggcatccccgagcaggaccaggtcaactac
gtgctgctgaaatacgctgccaagtacaacgtaaaaatcatcgcctccaacgactcccac
tatgtggaccaggccgatgccaacgcacacgacatcctgctctgtatcaacaccggcgag
aaaaaaagcacgcctaccaataaagaattttccgatgatgaagcggcgcctaaaaacacc
cgcttcgctttctataacgatcagttctatttcaagaccacggaggaaatgaccgcgctg
ttccatgacctcccgcaggcgatagacaacaccaacgagatcgtggacaaagtacagctg
ctggacctgaagcgcgacatcctgctgcccaactttcccatcccgaaagaattccttacg
caggaccagtacctgcggcacctcacctacgagggcgcccgcacccggtaccgggaaatg
accgccgacattgaagaacgtatcaactttgagctgcaggtaatcgaaaacatgggtttt
gccggttacttcctcatcgtatcggacttcatcaaagctgggcgtgacctgggcgtattc
atcggccccggccgtggttccgccgccggctctgccgtggcctactgcatcggcatcacc
aatatcgaccccatcaaatacaacctgctgttcgaacgtttccttaacccggaccgtaag
agcatgcccgatattgatacggacttcgacgatgaaggccgtcagaaagtaatcgactac
gtagtacagaaatatggccgcaaccaggtagcgcagatcatcacctacggtaccatggcg
gccaaaatgagtatcaaggacgtagcccgtgtaatggacctcccgctcgtggaatccaac
tcactggccaaactggtaccggaaaaacccggcattcagctggaccgtatcttcaacgcg
ccgctggaaggcgaaaaaagcctggccgacaaggaaggcctcgccggggaagatatcgaa
aacgtaaaacgcctgcgcgaactgatcaaaggcgatgacctccagggcgaagtgctccgc
gaagcctgcgtactggaagggtctgtacgtaacaccggtatccacgcggcaggtatcatc
atcgccccgcaggacctgtacgacctcattccggtatccaccgccaaagactcagacctc
ctcgtaacccagttcgagggcagcatcatcgaatctgccggcgttatcaagatggacttt
ctggggctgaaaaccctgaccatcatcaaaggcgcactggaactgatacgtatgaaccac
ggcgtggaaattgaaatcgacaacatcccgctggacgacgccaaaacatacgaactgtac
cagaaaggcgaaaccaacgccacgttccagttcgagtcgcccggcatgcagaaatatctc
cgtgaactgaaaccggaccgtttcgatgacctcatcgcgatgaacgccttgtaccgcccg
ggcccgctcgagtatatcccgtccttcatccgccgtaaacacggactggagccggtaacc
ttcgacctcccggacatggaggaacacctggcggaaacctacggtatctgcgtataccag
gaacaggtaatgttgctcagtcagaaactggccaacttctcccgcggcgacgccgacatt
ctccgtaaagcgatgggtaaaaaacaaatcgccgtactgaacaagatgaaggcccagttc
atggaaggttgcgccactcacggatacgacctgaaagtatgcgaaaaagtatggactgac
tgggaagccttcgcctcctacgcgttcaacaaatcgcacgctacctgctacgcctttgtg
gcctaccagacagcctacctgaaagcccactacccttccgaatacatggcgtctgtactg
aactgcgccagcaacatcgagaagatcaccttcttcatggaagaatgtaaacgcatgggc
atcgacgtattaccgccggatgtaaacgaatccctgaaaggtttcgcggtgaacaaacaa
ggccatatccgtttcggcctgggcggcctgaaaggcgtgggcgaagctgccgtggaaaac
ctcctggaagaaaggaaaaaagacggccccttcaaaaatgtgttcgactttatcaaacgc
gtgaaccagcgcgctgttaataaaaaatcactcgaggccctgatcatgtccggcgctttc
gactgcttccccgaattccaccgggcgcaatatttccacaagcccgaaaacgagcccatg
aacggcctcgacagaatcgtgaaattcggtcagcaggtatccgcaggctcttccaatatc
ggcagcctcttcggcgacgccgaaatgccggacgtggaaccgccgaaaatcccgaactgc
gacccatggccgctgatcatgaaactcaacaacgaacgcgacattaccggtatctatatc
tccggccacccgctggacgactaccgttttgagctgaagcactaccatatgaacacggtg
caggaactcgttgagtatcagtcagaaataagcacccccggcagcaacggcggccgctcc
cgcgaacgcaacttccggctggcggtatatgtgaccaacgcccaggaaagaatttcccgc
aacaaccggcagttcggtattatgaccatcgaagactattccggtaaattcgaatttgcc
ctgtggagcgaagactttatccggttcgcaccctacctcaagcccggcctctgcctgttc
atcaacggcgggtttaaatccaagcgctttaatgacaacgaatacgagttcaaggtaaac
agcatacagctgctgcaggaagtgaagaaaacacataccaaacaggtgtttctcgccact
tcccccaaacacctgaaccgggaaacggtagacttcctcgtggagaacgtaaaccgcttc
cccggcagcagtaccctgcatatgcagctcgtggacatagacaataatatgcaggtgaaa
ctgcatactttcaacaaaaacatcgagatgaatgacgagttggcacatttcctgcgaaaa
caaccggacctcgatgtgtacatagagataatcaataagtaa
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