Chitinophaga oryzae: HF329_14460
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Entry
HF329_14460 CDS
T07451
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy
Chitinophaga oryzae
Pathway
coy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF329_14460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coy03021
]
HF329_14460
Transcription machinery [BR:
coy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF329_14460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
Vit_b-sht_shell
Motif
Other DBs
NCBI-ProteinID:
QJB32460
LinkDB
All DBs
Position
3816812..3817402
Genome browser
AA seq
196 aa
AA seq
DB search
MDHDNEKQWLLAVASGDERSFRQLVQTYWPQVYGTALRLTRSPEQAKDLSQDIFLKLWNN
RRKLSEVDNAGTFIYVCARNLIMDFLSKKVLRTDNLDTLTGHLQADPLPDAQARMEYREL
ESLLSKAIEHLPAKVKEVFILHRFQGLSHPQIAQQLNISVVSSQTYIVRALRSIRDYLER
HPERTFTLLVLLTAFF
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
ttggaccacgataatgaaaaacaatggctgctcgccgttgccagcggcgatgaacgcagc
ttccggcagctggtacagacgtactggccgcaggtgtatggcaccgcgttacgccttacc
cgctctcccgaacaggccaaagacctctcacaggatatctttttgaaattgtggaacaac
cgccggaaactttccgaggtagacaatgcaggcacctttatttatgtatgtgcacgcaac
ctgatcatggacttcctttccaaaaaagtgctgcgcaccgacaacctggacacgctgacg
ggccatctgcaggccgacccgctccccgatgcgcaggcccgcatggaataccgggaactg
gagagcctcctcagcaaagccatcgaacatctccccgccaaagtgaaggaagtgtttatc
ctgcaccgctttcaggggttaagccacccgcagatcgcgcagcagctgaatatctcggta
gtcagctcccaaacctacatcgtcagggccttgcgcagcatccgcgattacctggagcgc
catccggagcggacttttactttactggtactgctgaccgcctttttttaa
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