KEGG   Chitinophaga oryzae: HF329_16820
Entry
HF329_16820       CDS       T07451                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy  Chitinophaga oryzae
Pathway
coy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:coy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HF329_16820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:coy03021]
    HF329_16820
Transcription machinery [BR:coy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HF329_16820
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_24 PhyR_sigma2 HTH_Tnp_4 HTH_11 GerE HTH_17 HTH_Crp_2 UPF0122 HTH_30 HTH_10 HTH_3 RPA_C Phage_antitermQ HTH_38 HTH_AsnC-type PhyR_sigma-like CENP-B_N
Other DBs
NCBI-ProteinID: QJB32891
LinkDB
Position
4452638..4453207
AA seq 189 aa
MSQLGVECISKIKEGDATAFQELFYAYKDALFGYACKLCRSSEMAEEAVQEVFMKVWINR
QQLDPTLSIRAYLYTAVRHCVFNILKKAALDEALRQSVFHHQSVAVNTTEEAVNAADLQR
VKSRVLDMLPPQRKLIFCLSRIEGLSHEEIALRLGISRNTVKDQIVKASRFLRQQLEYLA
IGLFLYLVI
NT seq 570 nt   +upstreamnt  +downstreamnt
atgagtcaattaggagtggaatgtatatctaaaataaaagagggggatgctaccgcgttt
caggagctgttctatgcctacaaggacgcgcttttcggatatgcctgtaagttatgccgt
tcgtcagaaatggcagaagaggctgtccaggaggtgttcatgaaggtatggatcaaccgg
cagcagctcgatcccaccctttccatccgggcttatctgtataccgccgtccggcactgc
gttttcaatatcctgaaaaaagccgcgctggatgaagcgctccggcaatcggtgttccac
catcagtctgtcgccgtcaatactaccgaagaagcggtgaacgccgcagacctgcaacgg
gtcaaaagccgggtgctggacatgctgccaccgcaacgaaagctgatcttctgcctcagt
cgcatcgaaggactctcccacgaagaaatagccctccgcctgggcatctccaggaatact
gtcaaagaccagatcgtaaaagccagccgtttcctccgccagcagctggagtatttggct
attgggttatttttatatttggttatttaa

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