Chitinophaga oryzae: HF329_18330
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Entry
HF329_18330 CDS
T07451
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
coy
Chitinophaga oryzae
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
coy03016
]
HF329_18330
Enzymes [BR:
coy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HF329_18330
Transfer RNA biogenesis [BR:
coy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HF329_18330
Prokaryotic type
tRNA splicing ligases
HF329_18330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PT-VENN
Xol-1_GHMP-like
Motif
Other DBs
NCBI-ProteinID:
QJB36174
UniProt:
A0AAE6ZPQ6
LinkDB
All DBs
Position
complement(4849874..4851196)
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AA seq
440 aa
AA seq
DB search
MARHFKHHDKAAIIQLLTDIRARPADFLHDEVLGKIAAVFADQPEERHFQSFDLLEAGGQ
LKIYGSKEIEQAARQQMEVAMSLPVTVQGALMPDAHMGYGLPVGGVLATEQAVIPYAVGV
DIGCRMALTLFDEGESFLKRYRYQLEMAIKAYTHFGMEGGLEFRQEHPVLDRPEFHDTPL
LKSLHGKAVRQLGSSGSGNHFVEFGLLTLEEDNSLSLPPKRYLALLSHSGSRGLGAAIAQ
HYTKIATDTCKLPRSAQQLAWLDMNSEAGQEYWLSMNLAGDYARACHQQIHRHLAKAAGL
KSLATIENHHNFAWEETLTDKRKVVIHRKGATPAHAGELGIIPGSMTTPAYLVRGKGAEE
SLYSAAHGAGRAMSRSKAREKMTVSALKKIVAGAGVTLIGGSVEENPLAYKDIDRVMDAQ
RELVQVEGRFMPAIVRMNNE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcatttcaaacatcatgataaggccgccattattcagctgctgacggatatc
agggcgcgtccggctgattttttacacgatgaagtgctgggaaagatagcagcggttttc
gctgaccagccggaggagcgtcattttcagtcgtttgacctgctggaagccggcgggcaa
ctgaagatatacggcagtaaagaaatagaacaggccgcccgccagcagatggaggtggcc
atgtcgctgcctgtcacggtgcagggcgcgctgatgcccgacgcgcatatgggctacggc
ctgccggtaggtggcgtgctggctaccgaacaggcggtgatcccttatgcggtgggcgtg
gacatcggctgccggatggcactcacccttttcgatgaaggagaaagttttctgaagcgc
taccgttaccagttggaaatggcgataaaagcgtacactcactttggcatggaaggggga
ctggagttccgccaggagcatccggtgctggacaggccagagtttcatgacacgccgctg
ttgaaaagcctgcatggcaaagcggtacggcagctgggatcgtccggcagcggcaaccac
tttgtagagttcgggttgctgacgctggaagaagacaactcgctgtcgttaccgccgaag
cggtacctggctttgctgtcacattccggcagccgcggtttgggcgccgctatcgcgcag
cattatacgaaaatagcgacagacacctgtaagcttccgcgttccgcgcagcagctggcc
tggctggacatgaacagcgaagcggggcaggagtactggctgagtatgaacctggcgggc
gattacgcccgtgcctgtcaccagcagatccatcgtcatctggcgaaagcagcaggactg
aaaagcctggccaccatcgaaaaccaccacaattttgcgtgggaggaaacgctgacggat
aaacggaaagtggtcatccaccggaaaggcgccaccccggcgcatgccggcgaactgggc
attattcccggcagtatgaccacgccggcctacctggtaagaggcaaaggcgcggaggag
tcgttgtattccgccgcgcatggagccggcagggcgatgagccgctcgaaggcccgggag
aaaatgaccgtgtcggcactgaaaaaaatagtggccggtgcgggcgtgaccctgatcggc
ggcagcgtggaagaaaacccgctggcctacaaggacatcgaccgggtgatggacgcacag
cgggaactggtgcaggtggaaggccgctttatgcctgctatcgtgcggatgaataacgaa
taa
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