Chitinophaga oryzae: HF329_18610
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Entry
HF329_18610 CDS
T07451
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HF329_18610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_18610
Enzymes [BR:
coy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HF329_18610
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HF329_18610
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HF329_18610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
QJB33219
LinkDB
All DBs
Position
complement(4915893..4916669)
Genome browser
AA seq
258 aa
AA seq
DB search
MPELPDLNVFSHNLEKTLLHKQLETIDVLVKKKLRTPEKELKAALEGQRLESIHRVGKEL
HFDFKNGHVLGMHLMLHGKLYLFEDTNEQKHTICTLLFKGGKGLALTDYQGQANVFLDPE
PKEAPDALSGELTPAWLETALAKKRTAIKKYLTDQHNILGIGNAYADDILWEARISPFSV
CNKIPSAAIKALHKAIHKVLTTAEKNIRKHHPDIINGEVRDYMLVHSHKLTESPGGAAIQ
HVSSGGKTYYTAEQVEYK
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacctgacctgaacgtgttcagccacaacctggagaaaacactgttgcac
aagcagctggagaccatcgatgtgttggtgaaaaagaaactgcgtaccccggaaaaggag
ctgaaagcggcgctggaagggcaacgcctggaatccatccaccgcgtgggcaaggaacta
cattttgattttaaaaatggccatgtgctggggatgcacctgatgctgcatggcaagcta
tatttgtttgaagataccaacgagcagaaacatactatctgtacattgttgttcaaagga
ggtaaaggcctggcgctgacggactatcagggccaggcaaacgtcttcctggaccctgag
ccgaaagaagcaccggacgccctttccggtgagctgacgccggcatggctggagacggcg
ctggcgaaaaaaagaacggccatcaaaaagtacctcacagatcagcacaatattcttggc
atcggtaatgcctatgcggatgatatcctgtgggaagcacgtatttcccccttttctgtc
tgcaataaaattccttcagcagccattaaagcgctgcacaaagccatccataaagtactg
accactgcagaaaaaaacatccgcaaacatcatcctgatattatcaacggcgaagtgcgc
gattatatgctggtgcatagccataagctgactgaaagccccggcggcgctgctattcag
catgtttcgtccggtgggaaaacctattatactgcggagcaggtggagtataagtga
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integrated database retrieval system
