Chitinophaga oryzae: HF329_19030
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Entry
HF329_19030 CDS
T07451
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03030
DNA replication
coy03430
Mismatch repair
coy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF329_19030 (holA)
03430 Mismatch repair
HF329_19030 (holA)
03440 Homologous recombination
HF329_19030 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coy03032
]
HF329_19030 (holA)
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_19030 (holA)
Enzymes [BR:
coy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF329_19030 (holA)
DNA replication proteins [BR:
coy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HF329_19030 (holA)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HF329_19030 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
QJB33294
LinkDB
All DBs
Position
complement(5005773..5006768)
Genome browser
AA seq
331 aa
AA seq
DB search
MEYQDIIRDWKQKKFKPLYWLEGEEEFFIDQVTTYAEHNLLDEAEKGFNLTVLYGKDTDW
TAVVNACRRYPMFAEKQVVVLKEAQSMRDLLKLEGYIDNLMPSTVFVVAHKQGKIDGRSK
MAKLIKEKGVLLSTKKMYDNQLPAWVEAYVSSRELAITQKAAILLVDHIGNDLSRIANEI
DKLLVNLPAGKKIDEGDIEKYVGISKEYNVFELQNALGQKNADKVFRIIAYFAANPKAAP
IQMTLPALYNFFAKVNLIFGVKGGEKEVAAALGVHPFFVKDYMAAARQYGPEGAEKAILL
LQQYNLRSIGINDAGVEDGELMKELMYKVMN
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcaggatatcatacgagactggaaacaaaagaaattcaagccgctctactgg
ctggaaggagaagaagagttttttatcgaccaggtgaccacctacgcggaacacaacctg
ctcgatgaagcggagaaaggatttaacctcacggtactctatggaaaagataccgactgg
accgccgtggtcaacgcctgccgccgctatcccatgttcgccgagaaacaggtggtggtg
ctcaaggaagcccagtccatgcgcgacctgctcaagctggaaggctatatagataacctc
atgccgtcgaccgtatttgtggtggcccataaacagggcaaaatcgacggccgcagcaaa
atggccaaacttatcaaagagaaaggcgtactgctgtctaccaaaaaaatgtacgacaac
cagctgccggcctgggtggaagcctacgtcagcagccgggaactggccatcacgcaaaaa
gcggccatcctgctggtagaccatatcggcaacgacctttcccgtatcgccaacgaaata
gataaactgctggtcaatctgccggcaggcaaaaaaatagatgaaggggatatcgagaaa
tatgtcgggatcagcaaagaatacaatgtatttgaactgcagaacgccctcgggcagaag
aacgccgacaaggtattccgcatcatcgcttacttcgctgccaatcccaaagcggcgccc
atccagatgacactgcccgccctgtataacttcttcgccaaagtaaacctgatcttcggg
gtgaaaggcggcgaaaaggaagtagccgcagcactgggggtacacccgttttttgtaaag
gattatatggccgccgcccgccaatacgggccggaaggcgcggaaaaagccatcctgctg
ctgcagcagtataacctgcgaagcatcggtatcaacgatgccggcgtggaggacggggag
ctgatgaaggaactgatgtataaagtaatgaactga
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