Chitinophaga oryzae: HF329_20930
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Entry
HF329_20930 CDS
T07451
Name
(GenBank) collagen-like protein
Organism
coy
Chitinophaga oryzae
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
QJB36201
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Position
5456492..5459632
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AA seq
1046 aa
AA seq
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MKKRYLLSLFCSMLLLTQLTYAQNGLKTINYQAVARNSNGTVLANESIKVRISILGGSAA
GPVQYQETHDAITNQLGLFNLQIGAGTPVSGTFAAVPWANANQYIKVEAAIGGGSFQVLG
NSPLASVPFALYAANGNPGPAGPAGPAGPAGPQGVQGPAGVAGAVGPAGPAGPAGPVGAT
GAVGPVGPVGPAGAVGPAGPQGPQGPQGPMGLPGAVGPAGPAGPVGPAGPVGPAGADGPA
GPAGPAGADGPVGPVGPAGPVEPAGPAGPVGPAGPAGPAGPAGDINGVAAGGDLTGTYPN
PVVAKLQSIPVSNAAPLAGQLLKFDGAQWVPGAAGGGLTLPFVATENNAATLFSITNDGD
GTSLEGVNNTTTSNVAAIRGIVSSASPGGFSAAVRGINNGTGGLGVGVYGSQAGSGWGVY
GTTPNGLGVYGNASANGYGVYANSNTGTGLNATSNNGIPANISIYNNANNNNALVVNSVG
NGTVVNVTTTGNGAGVRSSTVAGFGVHGITSTLTSAGVVGDNNGGGEAVVGRTTSDIAGA
VVGRNDGGGYGVRGFIATSTSGTGIGVLGQVGLNNSTGRAGRFENFNNTNTTGNTLEVET
NGNGNIPDNTQGNAASFLVNNTNSVAAAIRAETNTIFGNFGAAGVFGVSSGTGGRAGLFY
ASNPSGNGASLISITDGNGNAITANAGKDGNGVETNIDGAGNAIYAWVPTFSTGRAGRFE
IFNESNTSDVITVKTVGNGIAGNFKVDKTTGTSPAVKGEVNSQFANFGTAGVYGQSSGTG
GYAGLFYSSNPAGNGPALLALSEGSGNGITANAGGNGDGVEASCDGSGNAISGFVPNFGT
GKAGRFANFNNANGQPVVHITTTGTGSGMLLNHQGPSGNIAVFQSASANVARINKAGRGF
FNGGTQNSGADVAEAFDVTGAIQQYEPGDVMVIATDADRTIEKSSEAYSSLVVGVYATKP
GVLLTEEDIETDLSDKAPLGVVGVIPTKVCNENGPIRRGDLLVTASKPGYAMKADPDKVK
PGQAIGKALQEFDGTQGKIKVLVNVR
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaagatacctgctttccctcttttgcagtatgctgcttttaacacagctgaca
tacgcacaaaacgggttaaaaacgatcaactatcaggcggtagccagaaacagcaacggt
acggtgctagccaatgagagcattaaagtgcggatctctatcctgggaggttctgctgcc
ggcccggtgcaataccaggaaacacatgatgccatcaccaaccagctggggttgttcaac
cttcagattggcgcaggtacgccggtgagcggcacttttgcggctgtgccctgggctaac
gccaaccaatatattaaagtagaagccgccatcggtggcggcagcttccaggtgctgggc
aattcaccgctggccagcgtgccctttgcactgtatgcagccaatggcaatcctggtccg
gcaggccctgcgggccccgcaggaccggcagggccgcagggtgttcagggaccggcaggt
gttgccggtgcagtaggaccagcagggccggcaggacccgcgggaccggtgggagctacc
ggcgccgtaggtccggttggaccggtagggccggcgggagctgttggtccggccggaccg
caggggccacaggggccacaggggcctatggggcttcccggcgcggttggaccggcagga
ccagcaggaccggtgggaccagcggggccagtaggaccggcaggagctgacggcccagca
ggacctgcaggacccgcaggagctgacggaccggtgggaccagtaggtcctgcagggccg
gttgaaccagctggaccagcaggaccggttggaccggcggggccagcaggaccagcaggg
cctgcgggagacattaacggtgttgccgcaggtggtgatctgacgggtacttaccctaat
ccggtggttgccaaacttcagagcatacctgtgagcaatgcagcaccgttggcagggcag
cttttaaaatttgacggcgcccagtgggtgcccggtgcagccggtggcggactgacgctt
ccttttgtggctacagaaaacaatgccgccacgcttttcagcattaccaacgatggtgac
ggcacttcgctggaaggagtaaataatactactacttccaatgtcgccgctatcaggggt
attgtgtcctcggccagtcccggtggtttttctgcagccgtgaggggtatcaataacggc
accggcggcctgggtgtgggcgtatatggctcacaggccggttccggctggggtgtttac
ggcactactcccaacgggttaggcgtttatggcaatgcttccgccaacggttacggcgtt
tatgccaacagtaataccggcaccgggctgaatgccaccagtaacaatggtatccccgcc
aatatcagcatttacaacaatgccaataacaataatgcgctggtggtgaattctgttggt
aatggtaccgtggtgaacgtaaccactacaggcaatggcgccggtgtgcgttccagtacc
gttgccggttttggcgtgcatggtattacctccaccctcacttcagccggcgtggtaggc
gataacaacggcggtggcgaggctgtggtgggccgtaccaccagtgatatagccggcgca
gtggtaggccgcaacgatggcggcggttacggtgtaagaggctttatcgctaccagcacc
tccggtaccggtatcggggtgttgggacaggtaggtctcaataacagcaccggccgggca
ggacgatttgagaatttcaacaataccaacaccaccggcaatacactggaggtagaaacc
aatggtaatggtaatatcccggacaacacacagggcaatgccgcctctttccttgttaac
aacaccaatagcgtggcagcagccatccgggcagaaaccaataccatctttggcaacttc
ggagcagccggtgtatttggcgtttcttccggaaccggcgggcgcgcggggcttttttac
gcctccaatccatctggtaacggcgcctcccttatttccatcaccgatggcaatggcaat
gccattaccgccaatgccggcaaagacggcaacggcgtagaaaccaatattgacggggcc
ggcaatgcaatatatgcctgggtgcctactttttctaccggcagggcaggacggtttgag
atcttcaacgaaagcaataccagcgatgtgatcacagtaaagactgtgggtaacggtatc
gccggtaatttcaaggtggacaaaaccaccggcacctctcctgcggtgaagggtgaggtg
aattcccagtttgccaattttggcactgcgggtgtttatggccagtcttccggtaccggt
ggttatgccggcttgttctattcctccaatcctgcgggcaacggtcccgctttgctggcc
ctttcagaaggcagtggcaatggtattactgccaatgcgggcggtaacggtgacggtgtg
gaagcttcctgcgacggcagcggcaacgctatttccggtttcgttcccaatttcggtacc
ggtaaagccgggcggttcgcgaatttcaataacgccaacggtcagccggtagtgcatatc
accaccacaggtaccggcagcggcatgttgcttaaccatcaggggcccagcggcaacatt
gctgttttccagagtgccagtgctaatgtggcgcgtatcaacaaagccggcaggggcttc
tttaacggcggcacccagaacagcggcgccgacgtggccgaagctttcgacgtaaccggt
gctatacagcaatatgagccgggcgatgtgatggtgattgccacagacgcagaccggacc
attgaaaagtcttccgaagcttattcttccctggtagtgggcgtatatgccaccaagccg
ggggtattgctgacagaggaagacatcgaaaccgatctttccgacaaagcgcctttgggc
gtggtgggcgtgatcccgaccaaagtatgcaatgaaaacgggcctatccgccgcggcgat
ctgctggtaactgccagcaagccgggctatgccatgaaagcggacccagacaaggtgaaa
ccggggcaggccattggcaaagccttacaggagtttgacggcacgcagggtaagatcaaa
gtgcttgtaaacgtgagataa
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