Chitinophaga oryzae: HF329_21400
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Entry
HF329_21400 CDS
T07451
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
coy
Chitinophaga oryzae
Pathway
coy02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF329_21400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coy03021
]
HF329_21400
Transcription machinery [BR:
coy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF329_21400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
GerE
PF0610-like_N
HTH_40
HTH_23
Mgm101p
HTH_10
TCAF_helical
DUF2999
PhyR_sigma2
Put_Phosphatase
HTH_28
HTH_Tnp_4
HTH_11
DUF2774
Motif
Other DBs
NCBI-ProteinID:
QJB33730
LinkDB
All DBs
Position
5571804..5572442
Genome browser
AA seq
212 aa
AA seq
DB search
MVRTSDIAQLSEAALIREIHAKNRQAFTYVYERHFRELVMAAYRYCKDAGIAQELVQEVF
IRIWENPALLDENGALRAYLYKAVINHALNYLKREKNIARHHSVIAASLTDSYLHNLQEE
QELKLRIYQEIEKLPKQCARVFKMSRFDGLKYREIAAQLQISEKTVENHILHALKTLREN
LFYRQDNSRDYTAHLRMLQLFLALAGEMLTRR
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atggtgagaaccagcgatattgcccaattgagcgaggctgcattgatcagggaaattcat
gcgaaaaacaggcaggcctttacctatgtatatgaacgtcacttccgggaactggtgatg
gcggcgtaccgctactgcaaagacgcaggcatcgcacaggaactggtacaggaggtgttc
atcagaatatgggaaaatcctgcgctgctggacgagaatggcgccctccgcgcctacctg
tacaaggcggtcatcaaccatgcccttaactatcttaagcgggagaaaaatatcgcgcgc
catcactccgtcatcgcagcatcactgacagacagctatctgcataacctgcaggaagaa
caggaactgaaactgcgcatctaccaggaaatagaaaaactaccgaaacaatgtgcaaga
gtatttaagatgagccgcttcgacggacttaaataccgggagattgccgcacaactgcag
atctcggaaaaaacagtggaaaaccacatcctccacgccctcaaaaccctccgtgaaaac
ctcttttaccgtcaggacaactcccgcgattataccgcccatcttcgcatgctgcaacta
ttcctcgccctcgcaggtgaaatgctgacacgtcgctga
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