Chitinophaga oryzae: HF329_22380
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Entry
HF329_22380 CDS
T07451
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
coy
Chitinophaga oryzae
Pathway
coy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HF329_22380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coy03021
]
HF329_22380
Transcription machinery [BR:
coy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF329_22380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
HTH_28
UPF0122
PhyR_sigma-like
KORA
Motif
Other DBs
NCBI-ProteinID:
QJB33890
UniProt:
A0AAE6ZM48
LinkDB
All DBs
Position
complement(5834241..5835107)
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AA seq
288 aa
AA seq
DB search
MRQLKITKSITNRESQSLEKYLQEIGKVDLITPEEEVNLAIRIKQGDQRALEKLTKANLR
FVVSVAKQYQNQGLSLSDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKVGLSNKISKAYSQLEQEFEREPSPDELATILEINTDEVEATLGVAARHV
SMDAPFIDGEDNSLLDVLENPNAVSADEELDHHDSLRREIERSLSTLTDRQKDVIMLYFG
IAVEHPMSLEDIGEKFGLTRERVRQIKDKAITKLRTTSRSKLLRNYLG
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaacttaaaatcactaaatccattaccaacagggaatctcagtccctcgagaag
tacttgcaggagattgggaaggtggatttaattacgccggaagaagaggtaaacctcgct
atccgcatcaagcagggcgatcaaagagcgttggaaaagctgactaaagctaatctccgc
tttgtggtatccgttgccaaacagtatcagaaccagggtctgtcactcagcgacctgatc
aacgagggcaacctggggttaattaaagctgctcaacgttttgatgaaacacgcggtttt
aaattcatttcctacgccgtatggtggatccgtcagtccatcctgcaggcactggccgaa
cagtccaggatcgtaaggctgccactcaacaaagtgggcctcagcaacaagatcagcaag
gcatattcccagctggaacaggagtttgaaagggagccgtcacccgatgagctggccacc
atcctcgaaatcaacaccgatgaagtggaagccaccctcggcgtagccgcccgccacgtt
tctatggacgcgccgtttatcgacggggaagacaattccctgctggacgtgctcgaaaat
ccaaacgccgtcagcgctgacgaggaactggaccatcacgactcccttcgccgggaaatt
gaaaggtccctgtctaccctcacagaccgccagaaagatgtgatcatgctgtatttcggt
atcgctgtggaacatcccatgtcgctcgaagatatcggggaaaaattcggcctcacccgc
gaaagggtacgccagatcaaagacaaagctatcactaagctaaggactacctccaggagc
aaattactccggaattacctgggttag
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