Chitinophaga oryzae: HF329_23940
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Entry
HF329_23940 CDS
T07451
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03420
Nucleotide excision repair
coy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HF329_23940
03430 Mismatch repair
HF329_23940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_23940
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF329_23940
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF329_23940
MMR (mismatch excision repair)
Other MMR factors
HF329_23940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
PcrA_UvrD_tudor
ResIII
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
QJB34174
UniProt:
A0AAE7DAD0
LinkDB
All DBs
Position
complement(6204505..6206850)
Genome browser
AA seq
781 aa
AA seq
DB search
MKANYLDELNERQREAVTHINGPLMIVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTF
TNKAAREMKERVEKILGGSEARNLYIGTFHSVFARLLRAEAHRLGYPNDFTIYDADDAKS
VVKTIVNELNLDDKHYKPNFVYNRISAAKNSLMGPEEYQLDHLVQQEDMRANRPLIGKIY
DMYAKRCFKNGAMDFDDLLFKMYVLLKSFPEVLHKYQHKFKYIMIDEYQDTNPAQYEIIK
LLGAVNENICVVGDDAQSIYSFRGATIQNILQFEKDYDDVRVVKLEQNYRSTKSILSVAN
EVIAHNKGQIEKNLWTDNNEGDTIKLVRTMTDNEEGKFVADTIAEQKLRNHYDNRDFVIL
YRTNAQSRSFEESLRRKGIPYRIFGGLSFYQRKEIKDFVAYLRVTMNTRDEEALKRIINY
PVRGIGKTTMEKTIVLANDHNITMWEVLERAREFGFKGGTLEAIEAFVVMIKSFQALLTT
HNAYDVAVVVGKSTNIVKELFNDKTTEGLARYENVQELLNSIKEFTETPDEEGELLDKSM
GSYLQQITLLTDADQGSDEDSNVVKLMTIHAAKGLEFPVVFTVGLEETLFPSGMSINTRE
ELEEERRLFYVAITRAKARLWLTHANSRYRFGNLVQNEPSRFLEEMPEKFIDRSYAGGGS
VRNAFGGGSTSGWGGGSNMGNMFDRMQKKTPGQTASQPSSSPKPAPRPVSAATTHVPTPG
FTPDDPAGMEPGMQVEHQKFGFGTIMGMEGAPNNRIATVVFPKGGGEKKIMLNYAKLRIV
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaaattatttagacgagcttaacgaaagacagcgggaagcagttacacatatc
aatggccccctgatgatcgttgcaggcgcgggttcaggaaaaacaaaagttctgaccacg
cgtattgcacacctgatgcggaacggggtagacgcgtttaatattctgtcgctcacgttt
accaacaaagcggcgcgcgaaatgaaagaacgtgtggaaaaaatcctgggaggcagcgaa
gcccgcaacctctatatcggtaccttccactccgtatttgcccgccttctccgtgcagaa
gcacaccggctgggctaccccaacgattttaccatctatgatgcagatgatgccaaaagc
gttgtgaaaactatcgtgaacgagcttaacctcgacgataagcactataaaccgaacttc
gtatacaaccggatctccgcggctaaaaacagcctgatggggccggaagaataccagctc
gatcacctcgtacaacaggaagacatgcgggccaacaggcccctgatcgggaagatctac
gatatgtacgccaaacgctgctttaaaaacggcgccatggacttcgacgatctcctcttc
aaaatgtacgtgctgctgaaaagcttcccggaagtactgcacaaataccagcataagttt
aaatatatcatgatcgatgagtaccaggataccaacccggctcagtacgagatcattaaa
ctgctgggcgctgtcaacgaaaatatatgcgtggtgggagacgacgcccagagcatctac
tccttccgcggtgccaccattcaaaacatcctccagttcgaaaaagactacgatgacgta
agagtagtaaaactggaacagaactaccgcagtactaaatccatcctgagcgtggccaat
gaagttattgcccacaacaaaggacagatcgagaaaaacctgtggacagacaataacgaa
ggcgataccatcaaactggtacgcaccatgaccgataacgaagaaggcaaattcgtagcg
gacaccattgcagaacaaaagctgcgcaaccactacgataaccgcgacttcgtgatcctc
taccgtaccaacgcccagagccgttccttcgaggaaagcctgcgccggaaagggatcccc
taccgtatcttcggcggcctgtcgttctaccagcggaaggaaatcaaggatttcgtggcc
tacctccgcgtcaccatgaacacccgcgacgaagaagccctgaaaaggatcatcaactac
ccggtacgcggcatcggtaaaaccaccatggaaaaaaccattgtcctcgccaacgaccac
aacattaccatgtgggaagtgctggagagagccagggagttcggtttcaaaggtggcacc
cttgaagccatcgaagcttttgtagtgatgatcaaaagttttcaggccttgctgaccacc
cacaacgcttatgatgtggccgtggtagtaggtaaatccaccaatatcgtaaaagagctg
ttcaacgacaaaaccacagaaggtctcgcccgttacgaaaacgtgcaggaattgctcaac
tccatcaaggaattcaccgaaacgccggatgaagaaggcgaactgctggataagagcatg
ggctcttacctgcagcagatcaccctgctcactgacgccgaccagggcagtgatgaggac
agcaacgtggtaaaactgatgaccattcacgccgccaaaggactggagttccccgtggta
ttcactgtgggcctcgaagaaaccctgttccccagcggtatgtctatcaatacccgggag
gaactggaagaggaaagacgcctgttctatgtggccattacccgggccaaagcaagactg
tggcttacacatgccaacagccggtatcgctttggcaacctggtacagaatgagcccagc
cgtttcctcgaagaaatgccggagaagttcatcgaccgcagttatgccggtggcggaagc
gttcgcaacgctttcggcggtggcagcacctccggatggggcggaggcagcaatatgggc
aatatgtttgaccggatgcagaaaaaaacgcccggacaaaccgcttcccagccgtcttct
tctcccaaaccggcgccacgtcccgtgtcagcagccactacccatgtgcctacccccggg
tttaccccggacgaccccgcaggcatggagcccggtatgcaggtggaacaccagaaattc
ggcttcggcaccattatgggcatggagggcgctcccaacaacaggatcgctaccgtggta
ttccccaaaggtggcggcgaaaagaaaattatgcttaactacgccaagctgaggatcgtc
agatag
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