Chitinophaga oryzae: HF329_24110
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Entry
HF329_24110 CDS
T07451
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
coy
Chitinophaga oryzae
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coy03032
]
HF329_24110
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_24110
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HF329_24110
DNA replication proteins [BR:
coy03032
]
Prokaryotic type
DNA Topoisomerases
HF329_24110
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HF329_24110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJB34206
UniProt:
A0AAE6ZJ69
LinkDB
All DBs
Position
complement(6240378..6241448)
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AA seq
356 aa
AA seq
DB search
MDNTAIITDPVAVARAVKLRYVKAGAPGYSRERTKNGDFVYKDEHGAVITDDTVLERIRK
LVLPPAWENVWISKWANGHLQATGLDVKGRKQYRYHTTWSQVRNETKYDRLRYFGALLPA
IRRQIQQDLHGSQLNKEKVIAIALAVMEETLIRVGNSAYEKLYGSHGLTTLRNKHVTING
SAAFFQFSGKKGVAHKIQLRHAALTRLLKKVRDIPGHELFQYYDDNGETHALDSGEINDY
LKQCTGEDFTCKDFRTWAGTVHALNLLAELEDFTSVTACKRNVVGIIDTVAAKLGNTRAV
CRKYYIHPQLLNDYENGTLEPWLKKIRLQRKQPANSDGLHADEKVLLDYLKQLAKQ
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggataacaccgcgatcataacagaccccgtggcggtagccagggcagtgaaattacgc
tacgtgaaggccggcgccccgggctactcccgcgaacgcacgaagaacggcgactttgtc
tataaagatgaacacggcgccgtcatcaccgacgataccgtgctggagcgtattcgtaag
ctggtgctgccgcccgcctgggaaaacgtgtggatctccaaatgggccaatggccacctg
caggctaccggcctagatgtgaaagggcgcaagcaataccgctaccatactacgtggtcg
caggtacgcaatgaaaccaaatatgaccggctgcgatatttcggcgcactgctgccggcc
atacggcggcaaatacagcaggacctccatggcagccagctaaacaaagaaaaggtgatc
gccattgcactggcggtcatggaggagacactgatccgcgtgggcaacagcgcctacgaa
aaactgtatggctcccacggcctcactacactccgcaataaacatgtgacgatcaacggc
tccgcagccttctttcaattcagcggcaaaaaaggcgtggcccataaaatccagttacgc
cacgccgcgctcacccgcctcctcaaaaaggtacgggacatacccggtcacgaacttttt
cagtactacgacgacaacggtgagacacacgcgctggattccggggaaatcaacgactac
ctgaaacaatgtaccggggaagactttacctgtaaagatttccgtacctgggcaggtacg
gtacatgcgttgaacctgctggcggaactggaggactttacttctgtgacagcctgtaaa
cgcaatgtggtgggtattatagacacggtagccgccaaactggggaatacccgcgccgtt
tgccggaaatattatatccacccccagctgctgaacgactatgaaaacggaacactggag
ccctggctgaagaaaatccggctccaacgcaaacaacccgccaatagcgacgggttgcat
gctgatgaaaaagttctgctggattatttgaagcagctagccaaacagtag
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