Chitinophaga oryzae: HF329_25230
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Entry
HF329_25230 CDS
T07451
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF329_25230 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coy03019
]
HF329_25230 (recQ)
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_25230 (recQ)
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF329_25230 (recQ)
Messenger RNA biogenesis [BR:
coy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF329_25230 (recQ)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HF329_25230 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_45
HTH_40
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QJB34421
UniProt:
A0AAE6ZJY9
LinkDB
All DBs
Position
6497349..6499550
Genome browser
AA seq
733 aa
AA seq
DB search
MAVVKVSLMDALREHFGFDSFKGNQEIIIKSILSGKDTFVIMPTGGGKSLCYQLPALMSP
GCALIVSPLIALMKNQVDLVRGYSSKDNVAHFLNSTLSKAQIKKVRTDLQTGKTKLLYVA
PETLTKQENLDFFRELEISFIAVDEAHCISEWGHDFRPEYRRLKEMIDQINDKLPIIALT
ATATPKVQSDIVKNLGLNTPNIYISSFNRSNLYYEIRPKRKKDQTIKDIVKYIHQHKGKS
GIIYTLNRKTTEELADMLSANNIKAVAYHAGLDPATRAQRQDMFLHEDVEVIVATIAFGM
GIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGNCICYYSHKDVQKLEHLMRDKPLS
EREMGAQLINETVAYAESAVCRRKVILHYFGEKYETEDCGQCDNCRNPKEKIEVKNRVVI
VLKAIKALEERFGTEYVVNVITGKTSPQISTYRHDQLDIFGEGKEFDAHFWNSLIRQMML
EGLIEKDIEEYGLLKVTDKGKKFLKKPYSIMVALNHQFDEDGIEDEEEANAEAHASADPV
LFEMLKELRKKVSKEKNLPPFVIFLETSLEDMATQYPTTVQELEKIQGVSKGKAIRYGKQ
FIDVIAKYVEENNITKPDDFVMKSVVNKSGMKVFIIQNIDKKIPLETIAKSKELTISQLL
DEMETIVASGTKLNLDYCIDEELDDYAQDEIMEYFKGCETSSLALAREELIENDYTLEQL
KLVRIKFLVEYGN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgtaaaggtaagtttgatggatgcattacgcgaacatttcgggttcgattcc
tttaaaggaaatcaggaaatcattataaaaagcatcctatcgggaaaagataccttcgtt
atcatgccaaccggcggaggcaaatccctgtgctatcagttaccggcactgatgagtccg
ggttgtgcgctgatcgtatctcccctgatagcactgatgaaaaaccaggtagacctggta
cgggggtatagcagtaaagacaacgtggcgcattttctgaactccaccctttcgaaggcg
cagatcaaaaaagtacgtaccgacctgcaaaccggcaaaacgaaactgttgtatgtggcg
ccggaaacactgacaaaacaggaaaacctggatttcttccgggaactggaaatatcgttc
atcgcggtggatgaagcacactgtatctccgaatgggggcacgacttccgcccggaatac
cgccgccttaaggagatgatcgaccagatcaacgataaactgccgatcattgcgctgacc
gccacggctacgccgaaagtacagagcgacatcgtaaagaacctgggattaaacactccc
aatatctatatctcttctttcaaccgttccaacctgtactacgaaatcaggcctaaacgc
aagaaagaccagaccatcaaggatatcgttaaatatatccatcagcacaaaggtaaaagc
ggcattatctacacgctcaaccggaaaaccaccgaggagctggccgatatgctgtctgcc
aacaatatcaaggccgtagcttatcatgccggcctggaccccgccacccgcgcccagcgg
caggatatgttcctgcatgaagacgtggaggtgatcgtggccaccatcgctttcgggatg
ggcatcgataaaccggatgtacggtttgtgatccactacaacatccccaaaagcctggaa
aactattaccaggaaaccggccgcgccggccgtgacggcctggaaggcaactgtatctgc
tactattcccataaggacgtacagaaactggaacacctgatgcgcgataagccgctcagt
gaaagggaaatgggcgcacagctgatcaacgaaaccgtggcctacgccgaaagcgccgta
tgccgccgtaaagtgatcctgcactacttcggagaaaaatacgaaacggaagattgcgga
cagtgcgacaactgccgcaacccgaaagaaaagatagaagtgaaaaacagggtggtgatc
gtgctcaaagccatcaaagccctggaagaacgcttcggcaccgagtacgtcgtcaacgtg
atcaccggcaaaaccagcccgcagatctctacttaccgccacgaccagctggacatcttc
ggcgaaggcaaagaattcgatgcccatttctggaactccctcatccggcagatgatgctg
gaaggcctgatcgaaaaagatatcgaagaatatggcctgctgaaggtaacagacaaaggc
aaaaaattcctcaaaaagccctactccatcatggtagcgctcaaccaccagttcgacgaa
gacggcatcgaagacgaagaggaagccaatgcagaagcccacgcttccgccgatcccgtg
ctgtttgaaatgctgaaggaactgcgtaaaaaagtttccaaagagaaaaacctccctcct
tttgtgatcttcctggaaacctccctcgaagacatggccacccagtaccccacgaccgta
caggaactggaaaaaatccagggcgtcagcaaaggaaaggctatccgctacggcaaacaa
ttcatcgacgttattgccaaatacgtggaagaaaacaacatcaccaagccggatgatttt
gtgatgaagagcgttgtcaacaaaagcggcatgaaggtgttcatcatccagaacatcgat
aaaaaaatcccgctggaaaccatcgccaaaagcaaggagcttacaatctcccagctgctg
gatgaaatggaaaccattgtagccagcggcaccaaactcaacctggattattgcatcgac
gaagaactggacgattatgcccaggatgaaatcatggaatacttcaaaggctgtgaaact
tccagcctggccctggcccgggaagagctgatcgaaaacgattacacgctcgaacaactt
aaactggtccgcattaagttcctggtggaatacggcaactag
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