Chitinophaga oryzae: HF329_27150
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Entry
HF329_27150 CDS
T07451
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HF329_27150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_27150 (mfd)
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF329_27150 (mfd)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HF329_27150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
DUF2482
Membrane_bind
Motif
Other DBs
NCBI-ProteinID:
QJB34777
UniProt:
A0AAE6ZL72
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All DBs
Position
6965490..6968861
Genome browser
AA seq
1123 aa
AA seq
DB search
MNLQAVLQLFQRDARLQTLVKGIQSPTPQYFQLSSLSGSAINFVAVSAWANADANHLFIL
NDKEEAAYFQNDLEELSQALDIFYFPDSFKKTGQFQELNSSHSMLRTEALMKFSGDSVRK
KVLVTYPEALWEKVAGSKAFSANMVQLKVGDVLKVDPLLEKLISWGFEHTDFVYEPGQYA
LRGGILDIYSFGNEKPYRIELFGEDIDSIRLFDPETQLSERKLTQVTLIANMDTHTVDHQ
KTSLLEFLPANTVVWMKDPAYIRGVVEQLEQRLDDWLLTGQKVKVNDDEDMVLNSDDFVK
AAPLLEQLLKRTTVVFGNKEYLTENGIQPETIVFDTQEQPVFNRQFDLLIKDLAQHNNNK
YSLFIFADNPRQLERLRSIFEDLKAAFVFFPIPVAISHGFIDHSLKLACYTDHQIFQRFH
KSRVKQAYNKNKAITMKTLRELQPGDYVTHIDHGVGVYSGLQKIESGGKMQEAIRIIYKN
NDLLYVNINSLHKISKYTGKEGVEPRVNKLGSDAWDKLKEKAKTQVKDIAKDLIRLYAVR
KAQQGFAHAPDTYLQTELEASFLYEDTPDQSKATADVKRDMESPAPMDRLVCGDVGFGKT
EVAIRAAFKSIVDGKQAAVLVPTTILAFQHYKTFSDRLKDFPCTVDYLNRFKSSKEKKET
LKRLEEGKIDIIIGTHALLSKDVKFKDLGVLVVDEEQKFGVSAKEKLKQLKHNVDTLTLT
ATPIPRTLQFSLMGARDLSIINTPPPNRQPIETEVQVFNQDAIRDAIYYETERGGQVYFV
HNRVKGLAEMSSLIQGLCPDLSIATAHGQLEGHQLEEVILDFIDRKYDVLVCTNIVESGV
DIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLTADSRKRLQTLEQ
HSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFDMYQKILDEAIRELKQNEFRDLF
KEQLEEKKDFVNDCTIDTDLEILIPDTYIESIQERLNLYQELDNITEDGRLQQFEKELTD
RFGPLPEPVRDLLTMIRCRWMAIQLGFEKMMLKEENLRCYFINNPDSPYFESPTFNHILT
YIQTRTNNAKLKQVGKNFMLVVNRIRHMDDLHAFLKGITDSRK
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaatttacaggctgtattacaattatttcaacgtgatgctcgcctgcagacgctggtg
aaggggattcaatcacccaccccacaatactttcagctgtcttccctcagcgggagtgca
ataaattttgtggcggtttcagcctgggcaaatgcagacgcgaaccatctctttattctg
aatgataaagaggaggcagcctatttccagaacgatctggaagaactcagccaggccctt
gatattttctacttccccgactctttcaaaaaaaccggacagttccaggagctcaacagc
agccatagtatgctgcgcacagaagccctgatgaaattttccggcgacagcgtgcggaag
aaggtactggtcacctaccccgaagcactctgggaaaaagtggccggcagcaaggctttc
agcgccaacatggtgcagctgaaagtgggcgacgtgctgaaagtggaccccctgctggaa
aagctgatcagctggggatttgaacataccgatttcgtatatgagcccggtcagtacgca
ctgagaggcggtatcctcgatatttattccttcggtaacgaaaaaccttaccgtatagaa
ttgttcggggaagatattgactccatccgcttgttcgatccggaaacccaacttagcgag
cgcaagcttactcaggtgacgctcatcgctaatatggacacccatacggtggaccatcag
aagacttcactgctggagttccttcccgccaataccgttgtgtggatgaaagaccctgcc
tacatccggggcgtggtggaacagctggaacaacggctggacgactggctgctgaccggc
cagaaagtgaaggtcaacgacgacgaggacatggtgctcaacagcgacgatttcgtgaaa
gccgctccgctgctggaacagctgttgaaaaggaccaccgtcgtcttcggcaacaaagaa
tatctcacagaaaacggcatacaaccggaaaccatcgtcttcgatacacaggagcaaccg
gtgtttaacaggcagttcgatctcctcatcaaagacctggcacaacataacaacaacaaa
tactccctttttatattcgcagataacccgcgccagctcgaacgcctgcgcagtatcttc
gaagacctgaaagcagcatttgtcttctttcccataccggtggccatcagccacgggttc
atcgatcactcgctgaaactggcctgctacaccgatcaccagatcttccagcgtttccac
aagtcaagggtaaaacaagcctacaacaaaaacaaggcgattaccatgaagacgctgcgg
gagttgcagcccggcgattatgtaacgcatatcgaccacggcgtgggcgtgtacagcggt
ttgcagaagatcgaatccggcggtaaaatgcaggaagctatccgcatcatttacaaaaac
aacgacctgttgtatgtaaatatcaactccctgcacaagatcagcaagtacaccggtaag
gaaggcgtggaaccgcgggtgaataagctcggcagcgacgcgtgggacaagctgaaagag
aaagccaaaacacaggttaaagatatcgccaaagacctgatcaggttatacgccgtaaga
aaagcccagcagggctttgcacacgctccggacacctatctgcagacagagctggaagcc
tccttcctgtatgaagatacgcccgaccagagcaaagccactgccgacgtgaaacgcgac
atggaaagccctgcccccatggaccgcctcgtgtgcggcgatgtgggcttcggtaaaacg
gaagtagccatccgtgctgcgtttaaatccatcgtggacggtaaacaggccgccgtactg
gtgccgaccactatccttgcattccagcactacaaaaccttctccgatcgtttgaaagat
ttcccctgtacggtggattatcttaaccgcttcaagtcttccaaagagaaaaaagaaacg
ctcaaacgcctcgaggaaggcaagatagatatcatcatcggtacccacgccctgctgagc
aaagacgtgaagtttaaggacctcggcgtgctggtggtagacgaggaacagaagttcggt
gtgtctgccaaagaaaagctgaaacagctgaaacataacgtagatacgctcacgctaacg
gcaacgcctataccgagaacgctgcagttttcgttgatgggcgcccgtgacctttccatc
atcaatacgccgccgcctaaccggcagcctattgaaacggaagtacaggtcttcaaccag
gacgccatccgggacgccatctactacgaaacggaaagaggcggacaggtatacttcgta
cacaaccgcgtgaaaggcctggcggaaatgtcgtccctgatacagggtctctgccccgac
ctgtctatcgctacggcgcacggccagctggaaggacatcagctggaagaagtgatcctc
gatttcatcgaccggaaatatgacgtactggtatgtaccaacatcgtggaaagcggtgtg
gacatccccaacgccaatactattatcatcaataatgcgcatcacttcggcttgagtgat
ctgcatcagctgcgtggccgcgtgggccgcagtaacaaaaaagctttctgctacctgctg
gccccgcctatgagcaccctcaccgcagacagccgcaaacgcctgcaaacgctcgaacag
catagtgagctgggtagcggcttccagatcgccatgcgcgacctcgatatccgcggcgcc
ggtaacctgctcggcggtgaacaaagcgggttcatggcggaaataggcttcgatatgtac
cagaagatcctcgatgaagctatccgtgaactgaaacaaaacgaattccgcgacctcttc
aaggaacagctggaagagaaaaaagacttcgtcaacgactgtacaatcgataccgacctc
gaaatactgatcccggatacctatatagaaagcatccaggaacgtctcaacctgtaccag
gaactggacaatatcacggaagacggcaggttacaacagtttgagaaagaactgacagac
cgcttcggcccgctgcctgaaccggtaagagacctgctcaccatgatacgctgccgctgg
atggccatacagctgggcttcgaaaaaatgatgctcaaagaagaaaacctccgctgctac
tttatcaataaccccgattccccgtattttgaatcgcctacgttcaaccatatattaacg
tatatacaaacccgtaccaacaacgccaaactgaaacaggtaggcaaaaacttcatgctg
gtggtgaaccgtatccgtcatatggacgatctgcatgctttcctcaaaggcattacggat
agccgcaaataa
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