Chitinophaga oryzae: HF329_30670
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Entry
HF329_30670 CDS
T07451
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF329_30670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coy03019
]
HF329_30670
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF329_30670
Messenger RNA biogenesis [BR:
coy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF329_30670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SUa-2TM
HEM4
CMS1
AAA_22
ERCC3_RAD25_C
Phage_integrase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QJB35437
UniProt:
A0AAE6ZMI9
LinkDB
All DBs
Position
7828806..7830074
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AA seq
422 aa
AA seq
DB search
MLFEQLGLIEPILKAIKKEGYTQPTPIQLQSIPIVLAGKDLLGCAQTGTGKTAAFAIPIL
QQLYNTRSGVQGGYKHIRALVLTPTRELATQIDESFEAYGRFTGLKHDVIFGGVPQHRQT
IALRNGTDVLIATPGRLLDLMNQGYIYLDHLEIFVLDEADRMLDMGFINDIKKVVRELPE
QRQTLFFSATMPPNIAKLANSLLYHPEKVEITPVSTTAERVEQCVFFVKKKDKQQLLDHI
LQDKNIKRTIVFTQTKHGADRIAKNLRKHNINADALHGDKSQASRQNTLANFKNGRLRVL
VATDIAARGIDVEALEHVINYDLPNVSETYVHRIGRTGRAGATGYALSFCATEERPFLNS
INKLTKQKIPSVRHPFEESALIEANNADPDAPKAEPRRPKPRNRNRYGRKDKVDKRDQRI
DF
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgagcaattagggttgattgagcccattttaaaagcaattaaaaaagaaggt
tatacccaacctacccccatacaattacaatccattccgatcgttttagcaggaaaagac
ctgttgggatgtgcgcagacaggcaccggcaagacagccgctttcgccattcccatcctg
cagcagttgtacaacacccgctccggcgtgcaaggcggctataagcatatccgcgcactg
gtactgacacctacccgggaactggcgacacagatcgacgaaagttttgaagcgtatggc
cggtttaccggattaaaacacgacgtgatattcggtggcgtgccgcaacaccggcagacc
atcgcgctgcgcaacggcacagacgtgctgattgccacgccgggccgcctgctggacctg
atgaaccaggggtatatttacctggaccacctcgagatatttgtactggacgaagccgac
cgcatgctggacatgggcttcatcaacgatatcaagaaggtagtacgtgagctgccggaa
cagcgccagacactgttcttctccgctaccatgccccccaatatcgccaagctggccaac
tcactgctgtaccacccggagaaagtagagatcacaccggtgtccactaccgctgaaaga
gtggaacagtgcgtgttcttcgtgaagaaaaaagacaaacaacaactgctggaccatatc
ctgcaggacaaaaatatcaaacgcacgatcgtattcacacaaaccaaacacggcgccgac
cgtatcgccaaaaacctgcgtaagcataatatcaacgcagacgccctgcatggcgacaag
tcacaggcgtcccggcagaatacgctggccaatttcaaaaatggccgtttacgcgtgctc
gttgccactgacatcgctgccaggggtatcgacgtggaagcactggaacatgtgatcaac
tacgacctgcccaacgtatcagaaacgtacgtacaccgcataggccgtaccggccgcgca
ggagccaccggctacgccctctctttctgcgccactgaagagcgtcctttcctcaacagc
atcaacaaactgaccaaacagaagatcccttccgtgcgtcatccgtttgaagaatctgcg
ctgattgaggctaataacgccgatccggatgctccgaaagcagaacccagaaggccaaaa
ccacgtaaccgtaaccgttatggccgtaaagacaaggtggataaacgtgatcagagaata
gatttttaa
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