Chitinophaga oryzae: HF329_31810
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Entry
HF329_31810 CDS
T07451
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
coy
Chitinophaga oryzae
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coy03032
]
HF329_31810 (topA)
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_31810 (topA)
Enzymes [BR:
coy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HF329_31810 (topA)
DNA replication proteins [BR:
coy03032
]
Prokaryotic type
DNA Topoisomerases
HF329_31810 (topA)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HF329_31810 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Glucosaminidase
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QJB35640
UniProt:
A0AAE7DB45
LinkDB
All DBs
Position
complement(8103753..8106107)
Genome browser
AA seq
784 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKILGKDFEVKSCFGHIRDLEKDDMGIDIENNFKPKYVIPEDK
EKVVKDLKKLAKETDEVWLATDEDREGEAISWHLCEVLGLDPKETKRIVFHEITKPAIEN
AVQHPRKLDMDRVNAQQARRILDRIVGFELSPVLWRKMSMRNSLSAGRVQSVAVRLIVER
EREINGFTAVSTFKVEAWFTGKDINGKNISFKAEGPNKFKTAEDAEKFLKDCVSAVYSVK
DIQVKPGKKSPAAPFTTSTLQQEASRKLGYSVSKTMLLAQKLYESGFITYMRTDSVNLSD
TAVAEIEKAIKTSFGDRYHQFRKFKNKNESAQEAHEAIRPTYMENSTVDDSDTRKLYELI
WKRTIASQMADAELEKTIAKISISTNNEELTASGEVLKFDGFLKVYMESHDDEDINEDEA
QEGSLPPLAVKQTLDLREMKATERFSRPAPRYTEASLVKKLEELGIGRPSTYAPTITTIQ
KRGYVEKRDKEGIKREFRILILKADKISQQTDSENTGAEKSKLFPTDLGMIVTDFLNQYF
NSVMDYGFTAKIEEEFDEIANGKKVWNKMLKEFYSPFHKDVENTLENAERVKGERQLGVE
ESTGKPIVARMGRYGPMIQIGKVEDEEKPRFAKLKTTQSIETISLEEAMELFRLPRNLGQ
FEDSEVIVNIGRFGPYAQHDKKFYSLKKEMDPYTVELDEVAPLIVEKRAAKDERTIKVFE
KEKIQILKGPYGPYIKQGLKNFKIPKEKIDTAADLTVEEAKAIIEEAKANPPKKKAPPRK
KKAE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatttagttatagtggagtccccggcaaaggccaagaccattgaaaaaatt
ctgggcaaggactttgaagtcaaatcctgcttcgggcacatccgtgacctggagaaggac
gacatggggatagacatcgaaaataacttcaagcctaaatatgtaataccggaagataaa
gaaaaggtggtaaaagacctgaagaagctggcaaaggaaaccgatgaggtttggctcgca
acggatgaggaccgtgaaggggaagccatttcatggcatttgtgcgaggtattgggcctc
gatccgaaagaaaccaaacgcattgtattccacgagatcaccaaaccggccatcgaaaat
gcggtacagcacccccgcaagctcgatatggaccgggtaaacgcccagcaggcccgccgt
atcctcgacaggatcgtgggctttgagctctcccccgtattatggagaaaaatgagtatg
cgtaactccctttctgccggccgtgtgcagtcggtggcggtacgcctgatcgtggaaagg
gaacgggagatcaacggtttcaccgccgtgagcacctttaaagtagaagcatggtttacc
ggtaaagacatcaacggtaaaaacatctcctttaaagccgaaggccccaacaagttcaaa
acagcggaagatgcggagaaattcctcaaagactgcgtcagcgcggtctattccgtaaaa
gatatacaggtaaaacccggcaagaagtcacctgccgcccctttcaccacttctaccctg
caacaggaagccagccgcaaactgggatatagcgtatccaaaaccatgttgctggcccag
aagctgtatgaaagcggttttatcacctatatgcgtaccgactccgtcaacctctccgat
acagcggtggcggaaatcgaaaaagcgatcaagaccagcttcggcgatcgctaccaccag
ttccgcaaattcaaaaacaaaaacgaatccgcccaggaagcgcacgaagcgatccgcccc
acctacatggaaaactccacggtagatgacagcgacacccgcaaactgtacgaactgatc
tggaaacgtaccatcgccagccagatggcggacgcagaactggaaaaaaccatcgccaaa
atcagtatctccaccaacaacgaagagctgaccgccagcggtgaagtactgaaattcgac
ggcttcctgaaagtatacatggaaagccatgacgatgaagacattaacgaagacgaagca
caggaagggtcactgccgccactggccgtgaaacaaacgctggacctcagagaaatgaag
gccaccgaaaggttctcccgccctgcgccccgctatacagaggccagcctcgttaaaaaa
ctggaagaactgggcatcggccgcccgtctacctacgcccctaccatcaccaccatccag
aaaagaggatatgtggaaaaaagggacaaagaaggcataaaaagggaattccgcatcctg
atactgaaagctgataaaatcagccagcagacagacagcgaaaataccggcgccgaaaaa
tccaagctgttccccaccgatctcggcatgatcgtgaccgatttcctcaaccaatacttc
aattccgtgatggactacggtttcaccgccaaaattgaagaagaattcgatgaaatcgcc
aacggcaagaaagtgtggaacaaaatgctgaaagagttttacagccctttccataaagat
gtggaaaacacgctggaaaacgcagaacgcgtgaaaggcgaacgccagctgggcgtggaa
gaatccaccggcaaaccgatcgtggcccgcatgggacgctacggccccatgatccagatc
ggtaaagtggaagacgaggagaaaccccgcttcgccaaactgaagacgacccagagcatc
gaaaccatctccctggaagaagccatggagctgttccgcctgccccgcaatctcggccag
ttcgaagattcagaggtgatcgtcaacatcggccgctttggcccgtacgcacagcacgac
aaaaaattctattccctgaaaaaggaaatggacccatacaccgtggaactggacgaagta
gcgccgctcatcgtggaaaagagagcagccaaagacgagcggaccatcaaagtatttgaa
aaggaaaagatacagatcctgaaagggccttatggtccgtacatcaaacagggcctgaag
aacttcaagataccgaaagagaaaattgacaccgctgcggacctgaccgtggaagaagcc
aaagctatcatcgaagaagccaaagccaatccgcccaagaaaaaagcgccgccgcggaag
aagaaagctgaataa
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