Colwellia sp. PAMC 20917: A3Q34_04100
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Entry
A3Q34_04100 CDS
T04511
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_04100
Enzymes [BR:
coz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3Q34_04100
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q34_04100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOW76106
LinkDB
All DBs
Position
958339..959565
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AA seq
408 aa
AA seq
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MSEFKEFSLLESIIDRVTLKGYKQPTPIQKECIPALIDGNDLLGIAQTGTGKTAAFSLPI
INNFGRNKIDIQAKSTRSLILTPTRELASQIMQNIDDYSEGLGLKTKVVYGGVGRQAQVD
SIALGLDILVATPGRLLDLIETGDINFKALEIFVLDEADTMLDMGFFKDVQTIISKLPKK
RQTLLFSATMPAEIEILAEAILTAPIKIQVAAETVTIDLVNQSVYHLDKANKVPLLFNIL
QKPEFEKVLIFCKTKYGADIIVKALEKASITAASLHSSKTQAVREEALQNFKDSNLRVLV
ATDVAARGIDVNNISLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDMRQLINI
ENSIGQIIPVVTEQPFHKEFSKLPKEVKKKVSKTNKTNRTNSTRKKRK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatttaaagaattttcacttttagagtcaattattgatcgcgttactcttaag
ggctataaacagcctacaccgatccaaaaagaatgtatcccggctcttattgatgggaat
gatcttcttggtatagcgcaaacgggaacaggaaagacggcggctttttcactgcctatt
atcaataattttggtcgaaataaaatagatatccaagcgaagagcacgcgttcgctaata
ctaacgccaacgagagagcttgcctcgcaaataatgcaaaacattgatgactactctgag
ggcttaggacttaaaactaaggttgtttatggtggtgtcggaagacaagctcaagttgac
tcgatcgcgcttggacttgatattttagtggcaacccctggacgattattagatttaatt
gaaacaggtgatataaattttaaggcgttagaaatatttgtcttagatgaagcagatact
atgcttgatatgggtttttttaaagatgttcaaactattatatctaaactgccaaagaag
cgacaaacactattgttttcagcgactatgcccgctgaaatagaaatactggcagaagca
atattaacagctccaataaaaattcaagttgcggctgaaacggtcactatcgatttggtt
aatcaaagcgtataccatcttgataaagcgaataaagtacctttactctttaatatattg
caaaaacctgaatttgaaaaagtgcttatcttttgtaaaacaaagtatggcgctgacatc
attgttaaagcattagaaaaagcatcaataacagccgctagccttcacagtagtaaaaca
caagccgttagagaggaagcgctacaaaactttaaagattctaatctaagagtattagtt
gccactgatgttgctgctcgcggaattgatgttaataatattagtttagttattaactat
aacctccctgaagatccaagaaattacatacatcgcataggtcgaactgctcgcgccggt
aaaagtggaatggccatttcatttgctgtagaaaatgatatgagacaattaattaatatc
gaaaatagcataggacaaatcattcctgttgttacagagcagccttttcataaagagttt
tcaaaattgcctaaagaagtcaaaaaaaaggtaagtaaaacaaataaaacgaacagaacg
aatagcacaagaaaaaaaagaaaataa
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