Colwellia sp. PAMC 20917: A3Q34_04840
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Entry
A3Q34_04840 CDS
T04511
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_04840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_04840
03400 DNA repair and recombination proteins [BR:
coz03400
]
A3Q34_04840
Enzymes [BR:
coz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3Q34_04840
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q34_04840
DNA repair and recombination proteins [BR:
coz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3Q34_04840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOW76242
UniProt:
A0A1D8RSZ7
LinkDB
All DBs
Position
complement(1130872..1133403)
Genome browser
AA seq
843 aa
AA seq
DB search
MHNLIISSLFSKAELRDLDQTVYNIIINYPKNHFAQRLKKVVDGDNTSLLDLFLSIKDYL
YSSQKELDNQHNNFPIPRGLSSEEGVLCDKAMLNYQVGSNFLTLSSPVITQKLMDVYEQK
QKRKVKKVEMDLALVSRLSDQNYSHYSSAGQRMAVRVALTCPQDSTLFINLPTGCGKTLV
AHACMLFSKSKALTIVIVPTVGLAIEQGKRAKELFESADNDSVQNYAWHGQLSEGEKSEI
RDNIHNDKQKVIFTSPESVTGSLLPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRSEFQR
FGALVASLRQVSNSPFKTILMSATFTQSNIDSLTILYCESDNKPIIVNGNFLRPEVSSTY
KNEGENTHLQSVVERVITLPKPLILYTTLVQDSVDLSYHLKAIGLNRIALFNGKTDIRSR
EKIIEQWQKDDLDIIIATSAFGVGMDKVDVKSVIHACIPDNIDRYYQEIGRAGRDGKAAT
SEVIYYDKQIAKAKKINSESIISTELGFKKWKGMWDSKVEVSSHVFLKGDLYQLDTSFYH
EGLSNRSDRNEDWNWLTLLFMQRAGLIRIFYDVPEIEDDSELNDFENNTQRKEYWKSYNS
KVLVQILNEQYLSNSYWETNIQKHRKKEKKTQDNGFLTLSENITSQKQPICKELVKYYTV
NGNSPQRACGGCVACEGFLPTVGDDVSVDNYSSPHLLPNTLNDYISFDNVCSVYYDKSQD
FTSEWKWSLFIKLMLDRKYIFAVKGDLEFLKRLAGKKNGLKSFKPFWISQSYHDNSNLWP
SLHINSSVDSEVLIPSFEEQATFFVAEYNQKTKSNKYRLWWQDNNKSIPLTNFIKIVEKN
TCL
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcataatttaattatttcctcattgttttcaaaggctgagttaagggatttagaccag
acggtttataatattattatcaattatccaaaaaaccattttgcacagaggttaaaaaaa
gtagttgatggagataacaccagtttattagacttgtttttatcaattaaagattacttg
tactcatctcaaaaagaattggataaccagcacaataactttccaatacctagaggttta
tctagtgaagaaggagtactctgtgataaagctatgctgaattatcaagttggttcaaac
tttcttaccctatcatccccagtaattactcaaaaattaatggatgtgtacgaacagaaa
caaaaacgtaaagtgaaaaaggtagaaatggatttagccttagtttcaaggttatcagac
caaaactatagccactactctagtgcagggcagagaatggctgtgagggttgctttaaca
tgccctcaagattcgaccctttttattaatttacctacggggtgtggtaaaacattagtt
gctcatgcatgtatgttatttagtaaaagtaaagcgctgacaatagttattgtccctact
gttggtttagctatagagcaaggtaaaagagcaaaagaattatttgaaagtgcagacaat
gattctgttcaaaattatgcttggcatggacaattgtcggaaggtgaaaaatctgaaatt
agggataacattcacaatgataagcaaaaagtaatttttacctctccggaatctgttacg
gggagcttattacctttattatttagattagctaagcaaaactctatagctaatatcatc
attgatgaagctcatttgattgacacttgggggagtaattttcgctctgaatttcaacgg
tttggagccttggttgcgtctttaaggcaagtaagtaattctcctttcaaaacaattctt
atgtctgcaacgtttactcaaagtaatatcgattcattaacaattttgtactgtgaatcc
gataacaaaccaattattgttaatggtaattttttacgtccagaagttagttcaacttat
aagaatgaaggtgagaacacccaccttcaatcagttgtagaacgagtaattactttaccg
aaaccactaattttatatacaacacttgttcaggattctgttgacttaagttaccatttg
aaagcgataggactgaatcgaattgccctgtttaacggtaaaactgatatacgctcaaga
gagaagataattgagcagtggcaaaaagatgacttagatataattattgctacatcggcc
tttggtgtcggtatggataaggtggatgttaaaagtgttatccatgcttgtattcctgat
aatatcgatcgctattatcaagagattggccgagcaggtagagacgggaaagcagcgaca
tctgaagtcatttattatgacaagcaaatagctaaagcaaaaaaaattaacagtgaaagt
attatatctacagagttaggcttcaaaaagtggaaaggtatgtgggatagtaaagttgaa
gtctcttctcatgtgtttttgaaaggagacttataccagttagatacttcattttatcac
gagggactcagtaatcgtagcgatagaaatgaagattggaattggctaacacttctgttt
atgcaacgtgcaggtttaatccgaattttttatgatgtaccagaaattgaagatgacagt
gaattaaatgattttgagaataatacccaacgaaaagagtattggaaaagttataacagc
aaagttttagttcaaattcttaatgagcaatatctttctaattcatattgggaaactaat
attcaaaaacatcgtaaaaaagaaaaaaagactcaagataatggttttttaactttatct
gagaatataacgtctcaaaaacaacccatttgtaaagagttagtaaagtattacacagta
aatggtaatagtcctcaaagagcatgtggaggttgtgtcgcatgtgaaggttttttgccg
acagtaggtgatgatgtatcggttgataattatagttcgccacacttactgccgaacact
ttaaacgattacatctcttttgataatgtttgcagtgtttattatgacaaatctcaggat
tttacatcagaatggaaatggtctttattcattaaactaatgcttgatagaaaatacatt
tttgctgtcaagggtgacctcgaattcttaaaaagactcgcggggaaaaagaacggactc
aagtcttttaaaccattttggatttctcagagttatcatgataacagtaacctttggcca
tctttacatataaattcatctgttgattcagaggtcttaattccttcctttgaagagcag
gcaacattctttgtagctgaatataaccaaaaaacaaaatcaaataaatatcgattgtgg
tggcaagataataataaatctattccattaacaaacttcattaaaatagttgagaaaaat
acgtgtctgtaa
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