Colwellia sp. PAMC 20917: A3Q34_08965
Help
Entry
A3Q34_08965 CDS
T04511
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3Q34_08965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coz03021
]
A3Q34_08965
03400 DNA repair and recombination proteins [BR:
coz03400
]
A3Q34_08965
Enzymes [BR:
coz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3Q34_08965
Transcription machinery [BR:
coz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3Q34_08965
DNA repair and recombination proteins [BR:
coz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3Q34_08965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
gerPA
Motif
Other DBs
NCBI-ProteinID:
AOW76974
LinkDB
All DBs
Position
complement(2080463..2084674)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFDALM
GAEAVLALLQQIDLEGEVAQMREELPEIGSETKRKKVTKRLKLMEAFAASGNKPEWMIMN
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEA
RTLMMSTNNVLSPANGEPIIVPSQDVVLGLYYLTRDRVNGLGEGMVFADTKEAEKAYRTG
VAELHARVKIRITEYFKDEEGNFTVPKTTLRDTTVGRAIMWQVCPKGMPYDLIDQPLGKK
PISKLINHAYRNLGLKETVIFADQIMYTGFHYAMIAGCSVGIDDMVIPAAKYTIIEESEE
EVAEIQTQFEQGLVTQGEKYNKVIDIWSSANEKISKAMMDNLSKETVINRDGVPEEQDSF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLNVSEYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTFDGLQMTPLIEGGDVVEPLRERV
LGRVVAEDVIKPGTDEVLLPRNTLIDEALCDFIEENSIDQMKVRSIITCKTDFGICAHCY
GRDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNTGTLK
LQNAKFVTNSEDHLVITSRSSEMTVIDELGREKERYKVPYGTVLSKKDGGSIVAGEIIAN
WDPHTHPIITEVAGKVQFVDLSDGVTMVRQTDDLTGLSSIIVTDAGQRNATGKEMRPALK
LVDANGEEVMIAGTEIPALYYLPGNAIVNLEDGADVNIGDALARIPQASSKTRDITGGLP
RVADLFEARKPKLPAILAEKTGVVAFGKETKGKVRLLITQPSGEVYEEMIPKTRLLNIYE
GEPVIKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQM
IRKCEILDAGDSDFLKGEQVEVARVNISNRELESAGKQPAEYEMQMMGITKASLATESFI
SAASFQETTRVLTEAAVAGKKDKLRGLKENVIVGRLIPAGTGYSYHQERAKRKLQAKMPA
VEEVAVSADDAAQALTDALNASD
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagagttcgatggtata
cgtatcggactagcctcaccagatcagattcgttcttggtcatttggtgaagtaaaaaaa
cctgaaacgattaactaccgtacgttcaaaccagaacgtgacggtctattttgtgcgcgt
atttttggtccagtaaaagattacgaatgtctttgtggcaaatacaagcgtttaaagcat
cgtggtgttatttgtgaaaaatgtggcgttgaagttacattaacaaaagttcgtcgtgac
cgtatgggtcatatcgaattagcaagcccagttgcacatatctggttcttaaaatcatta
ccatcgcgtattggtttattacttgatatgacacttcgtgatatcgaacgtgttctttat
tttgaatcttatgttgttaccgaacctggtatgacaacattagaaaaaagccaaattcta
actgaagaagaatatcttgatgctttagaagagcatggtgatgaatttgacgcattaatg
ggtgctgaggctgttttagctttactacaacaaatcgatttagaaggcgaagtagcgcaa
atgcgtgaagagcttcctgaaattggtagtgaaactaagcgtaaaaaagtcactaagcgt
ttaaaattaatggaagcattcgccgcttcaggtaataagcctgagtggatgattatgaac
gtactacccattttaccaccggatttacgtccgttagtacctttggatggtggccgtttc
gctacgtctgatttgaacgatttataccgtcgtgttattaaccgtaacaaccgtttaaaa
cgccttcttgacttagtagcaccagatattattgtacgtaacgaaaaacgtatgttacaa
gaatctgttgatgcacttcttgataacggtcgtcgtggtcgcgcaattaccggttctaac
aaacgtcctcttaaatctcttgccgatatgattaaaggtaagcaaggtcgtttccgtcag
aatctattgggtaaacgtgttgattactctggtcgttctgtaattactgttggtcctaca
ctgcgtttacaccagtgtggtttaccgaaaaaaatggcacttgaattattcaaaccattt
atttacggtaaattagaagctcgtggtttagcgactacgattaaagcggctaaaaaatta
gttgaacgtgaaggcgctgaagtttgggatgtacttgacgaagttattcgtgaacatcca
gttatgcttaaccgtgcaccaacacttcacagactaggtatccaagcgtttgaacctgtt
ctaattgaaggtaaagcaattcacttgcatcctttagtttgtgcggcatacaatgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttaactatcgaagcacaaatggaagct
cgtaccttaatgatgtctaccaataacgtgttatcaccagcaaacggtgagccgattatt
gtaccatcacaagatgttgttttaggcttgtactacttaacacgtgaccgtgttaatggt
ttaggtgaaggcatggtttttgctgacactaaagaagctgaaaaagcttaccgcacaggt
gttgcagaacttcacgcccgtgtaaaaatccgtatcactgaatactttaaagacgaagaa
ggtaactttactgtacctaaaactactttacgtgataccacggtaggtcgcgccattatg
tggcaggtttgtccaaaaggtatgccttacgatttaatcgatcaaccgcttggcaaaaaa
ccaatttcgaaattaattaaccacgcttaccgtaacttaggtttgaaagaaacggttatt
tttgctgaccaaatcatgtacacaggtttccattacgcgatgatcgcgggttgttctgtt
ggtattgatgatatggttattcctgcggctaaatacactattatcgaagagtcggaagaa
gaagttgctgaaatccaaactcaattcgagcaaggtttagttactcagggcgaaaaatat
aacaaagttattgatatttggtcatccgccaacgagaaaatctctaaagcgatgatggac
aacttatcaaaagaaactgttattaaccgtgacggcgtgccagaagaacaagattcattc
aactctatctatatgatggctgactcgggtgctcgtggtagtgctgctcagatccgtcag
ttagcgggtatgcgtggcttgatggctaaaccagatggttctatcatcgaaacgccaatc
aaagctaacttccgtgaaggtttgaacgtatctgaatacttcatctcaactcacggtgcg
cgtaaaggtcttgccgatactgcacttaaaacagctaactcgggttacttaactcgtcgt
ttagttgatgttgcacaagatttggttgtaactgaacatgattgtggtactttcgacggt
ctacaaatgacaccactaatcgaaggtggcgatgttgttgagccattaagagaacgtgtt
cttggtcgtgttgttgctgaagatgttatcaagccaggtactgacgaagttttattacct
cgtaacacgctaattgacgaagctttatgtgatttcattgaagaaaattcaattgatcaa
atgaaagtacgttcaattattacctgtaaaaccgattttggtatttgtgctcattgttac
ggtcgtgatttggctcgtggccatatgatcaaccaaggtgaagctattggtgttgttgca
gcacaatcaatcggtgaacctggtacacagcttaccatgcgtacgttccacatcggtggt
gccgcatcgcgtgcttctgctgaaaacaacgtacaagttaaaaacacaggtactttgaaa
cttcaaaatgctaagtttgtaactaactctgaagatcatcttgttattacctcacgttct
tctgaaatgacggtaattgatgagctaggtcgtgagaaagaacgttataaagtgccttac
ggtactgtgctttctaagaaagatggtggttcaattgttgccggtgaaatcatcgctaac
tgggacccgcatactcaccctattattacggaagtagcaggtaaagttcagttcgttgat
ctttctgatggcgtgactatggttcgtcaaactgatgatctgactggtctttcaagtatt
attgttactgacgcaggtcaacgtaatgcaacgggtaaagaaatgcgcccagcattgaaa
cttgttgatgctaacggtgaagaagttatgattgccgggacagaaatcccagcactttac
tacttaccgggtaatgcgattgttaacctagaagatggtgcggatgtaaacattggtgat
gcacttgctcgtataccacaagcaagttctaaaactcgtgatataaccggtggtcttcca
cgtgttgctgatttatttgaagcacgtaagcctaaacttcctgcaattcttgctgagaaa
acaggtgttgttgctttcggtaaagaaaccaaaggtaaagtgcgcttattaatcactcaa
cctagcggtgaagtatacgaagagatgatccctaaaacgcgtcttttgaatatctatgag
ggtgagccagtaatcaaaggtgaagttattgccgatggtcctgagtctccgcatgatatc
ttgcgtttacgtggtgttgcacctgttgctaattacattgttaacgaagtacaagaagta
tatcgtttacaaggtgtaaaaattaacgacaagcacatcgaagttatcgtccgtcaaatg
attcgcaagtgtgaaatcttagacgcgggtgatagtgatttcttgaaaggcgaacaagta
gaagtagcgcgtgttaatatttcaaaccgcgagcttgaatctgctggtaagcaacctgct
gaatacgaaatgcaaatgatgggtattactaaagcatcattagcaactgaatcgtttatt
tcagcggcatctttccaagaaacaacacgtgtacttactgaagctgctgttgcaggtaag
aaagataagttacgtggcttgaaagaaaacgttatcgttggtcgtttgatcccagcgggt
acaggttattcgtaccatcaggaacgtgctaaacgtaaactacaagcaaaaatgcctgct
gttgaagaagtcgctgtttcagctgacgatgcagcacaagcattaactgacgcactaaat
gctagtgattaa
DBGET
integrated database retrieval system
