KEGG   Colwellia sp. PAMC 20917: A3Q34_09240
Entry
A3Q34_09240       CDS       T04511                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
coz  Colwellia sp. PAMC 20917
Pathway
coz02024  Quorum sensing
coz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:coz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3Q34_09240
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    A3Q34_09240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:coz03019]
    A3Q34_09240
   03036 Chromosome and associated proteins [BR:coz03036]
    A3Q34_09240
Messenger RNA biogenesis [BR:coz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     A3Q34_09240
Chromosome and associated proteins [BR:coz03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    A3Q34_09240
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AOW77024
LinkDB
Position
complement(2129733..2129990)
AA seq 85 aa
MAKGQSLQDPFLNALRRDRIPVAIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPSRAVSTMPAPQTGDYSQEQQD
NT seq 258 nt   +upstreamnt  +downstreamnt
atggcaaaggggcaatctttacaagacccatttttgaatgctttacgacgtgatcgcatt
ccggtagcaatatatttagttaatggcattaaactacaagggcaagtagagtcctttgat
caatttgttattttacttaaaaatacagtgagtcaaatggtctataaacacgccatttct
actgttgttccttcaagggcagtttctacgatgccagcaccacaaactggtgattatagt
caggaacagcaagattaa

DBGET integrated database retrieval system