Colwellia sp. PAMC 20917: A3Q34_11790
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Entry
A3Q34_11790 CDS
T04511
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_11790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_11790
03016 Transfer RNA biogenesis [BR:
coz03016
]
A3Q34_11790
Enzymes [BR:
coz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A3Q34_11790
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3Q34_11790
Transfer RNA biogenesis [BR:
coz03016
]
Prokaryotic type
tRNA degradation factors
A3Q34_11790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AOW77478
LinkDB
All DBs
Position
2738719..2741172
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AA seq
817 aa
AA seq
DB search
MNRVYPLKDPHQKREAQKYDNPVASRELLLSVIENSAVPLNFKAICKALNYHDETHHVGV
KRRLRAMENAGQLVFNKLKQYVIPAKNSLITGKVTGHRDGFGFFIPDIAKGEKPGKDFYI
SSHEMQRVFHGDIVSAILVDRTDRKGRQEIKIIEVIEPRKAGIVGRFYVEHGIAYIVPDD
ARIKQDILIEPESKLGARHGQMVVVNVLHRPSKRNNAVGEVIEVLGDHLAPGMEIDIALR
EHDLPHEWSASVIEEVATIADEVEDEAKISRVDLRDLPLVTIDGEDARDFDDAVYCQPEE
SGGWRLWVAIADVSYYVRNGTALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVD
RLCMVCEMTISASGELSGSKFYSAVMRSHARFTYSKVAAILSGEDATEKAALREQYQPLV
GDLENLYQMYLALKTSRTNRGAIAFETSESLFLFNSDRKIESIVPLIRNDAHKIIEECMV
LANVATAKFVEKHQMPGLFRVHDKPSEDKYKNFVSYLTELGISLPTREQPEPADYANILN
HVQGRPDQELIQTMLLRSMRQAVYQSENLGHFGLALESYSHFTSPIRRYPDLVIHRVIKA
ILAKQAQSANESNEANAGFYQYSPEEVIELGEHCSMTERRADDATRDVADWLKCEFMQDH
VGDTFTGVISTVTNFGLFVRLTDLHIEGLIHITSLGHDYYHFDDVRMCLSGERSGTKYRI
GDVLEVNVAAVNLDEKKIDLVLSGEQAPKSSGKPEGKSKAKSTGLRKNADQGFNRPKGTS
DKGAPKKPKDKKTEKSKAKKRTARKKRPGKNARKTAE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
attaatcgagtttatcccctgaaagatcctcatcaaaaacgcgaagcacaaaaatacgac
aatccagtggcgagtcgagaattactattatcagtaatagaaaactctgctgtgccactt
aattttaaagcgatatgcaaagctttgaattatcatgatgaaacgcatcatgttggcgta
aaacgacgtttgcgtgctatggaaaatgcaggtcagcttgtttttaataaacttaagcaa
tatgtcattcctgccaaaaatagtttgatcacgggtaaagttaccggtcatcgtgatggt
tttggcttttttatacctgacattgctaaaggtgagaagccaggcaaagatttttatatt
tcatctcacgaaatgcaacgggtattccatggtgatattgttagcgctattttagtggat
cgtaccgatcgcaaaggccgacaagaaattaaaataattgaagtcatcgaaccgcgtaaa
gccggtattgttggccgcttctatgttgaacatggtatcgcttatattgttccagacgat
gcgcgtattaaacaagatattctgattgaacccgaaagcaagcttggtgcacgtcacgga
caaatggtggtggtcaatgttttgcatcgtccatcaaaacgcaataatgccgtaggtgaa
gtgattgaagtcttaggtgatcatttagcaccaggcatggaaattgacattgctctacgt
gagcatgacttaccacacgaatggtcggctagcgttattgaagaagttgcaacaatagca
gacgaagtcgaagacgaagcaaaaatttcacgagttgacttacgtgacttaccgctagtc
actatagatggcgaagacgctagagattttgatgatgctgtttactgtcagcctgaagaa
tcgggtggctggcgtttatgggtggctatagccgacgtaagttactacgtacgtaatggt
acagcgcttgatgatgaagctatatctcgtggtaattcggtctattttccgagccaagtt
attcctatgttaccggaaaaactatctaacggcttatgttcattaaaccctgatgttgac
cgtttatgtatggtttgtgaaatgactatcagtgcgtcaggtgagttgtcgggtagtaag
ttctactcagcggttatgcgctcacatgctcgctttacttatagcaaagtcgcagcaatt
ctatcgggtgaagacgcaaccgaaaaggcagcgttgcgcgaacaatatcagccattagtc
ggcgatttagaaaatttatatcaaatgtatttagcattaaagacctcgcgaactaatcgt
ggtgccattgcttttgaaacctccgagtctctatttttgtttaatagtgatcgtaaaata
gaatcgattgtgccgcttattcgtaacgatgcgcataaaatcattgaagaatgtatggtt
ttagcgaatgtggcaacggcaaaatttgtagaaaaacaccaaatgcccggtttattccgt
gtccatgacaaaccgagtgaagataagtataaaaactttgtcagttatttaactgaactc
ggcatatccttgccaacgcgagagcaacctgaacctgctgattacgctaatattttaaac
catgttcaaggtcgtccagatcaagagttgatccaaaccatgttgctgcgctctatgcgc
caagccgtttatcaaagtgaaaatttaggacattttggtttagcgctcgagtcttatagt
catttcacttcgccaattcgtcgttatccagatttggtcattcatcgagtgattaaagcg
attctggcaaaacaagcacaaagcgctaacgaaagtaatgaagctaacgccggattttac
caatattcacctgaagaagttattgaactaggagagcattgttcaatgaccgaacgtcgg
gctgatgatgcgactcgtgatgttgctgattggttgaaatgtgaatttatgcaagatcac
gttggtgatacttttaccggtgttatttcaaccgtgactaattttggtctatttgtacgc
ttaaccgatttacatattgaaggcttaattcatataacttctttagggcatgactattat
cactttgatgatgttcgcatgtgtttgagtggtgaacgttcgggcactaaatatcgtatt
ggcgatgtcttagaagttaatgttgccgcagtaaacttggatgagaaaaaaatagatctc
gttttgtcgggtgaacaagcgcccaaaagtagtggtaaacctgaaggtaaatcgaaagct
aaaagtacagggctgagaaaaaacgccgatcagggctttaataggcccaagggaactagc
gacaaaggggcgcctaaaaagccaaaagacaagaaaacagaaaaatcaaaagctaaaaag
cgtaccgcacgaaaaaaacgtccaggtaaaaatgctcgtaaaacggctgagtaa
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