Colwellia sp. PAMC 20917: A3Q34_12110
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Entry
A3Q34_12110 CDS
T04511
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3Q34_12110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coz03400
]
A3Q34_12110
DNA repair and recombination proteins [BR:
coz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3Q34_12110
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3Q34_12110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
nSTAND1
AAA_21
DnaJ_CXXCXGXG
AAA_25
AAA_23
nSTAND3
Viral_helicase1
MMR_HSR1
cobW
NTPase_1
Glu_synthase
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AOW77532
LinkDB
All DBs
Position
complement(2806381..2809230)
Genome browser
AA seq
949 aa
AA seq
DB search
MKNIEVRGARTHNLKNISLDIPREKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGEPRC
PTHHQPLAAQTNSQMVDKVLALEEGTKVMVLAPVLQGRKGEHVKLLENLASQGYIRARID
GEVCDLSDPPTLELHKKHTIEVVVDRLKVRDDIQLRLSESFETALSLTAGTAKVAFMDEP
DREELVFSANFACSKCGYSMQELEPRLFSFNNPAGACKTCDGLGNQQFFDSARVITNPEL
SLAGGAIRGWDKRNFYYFQMLQALSDHYKFALDKPFEKLSKSDQDLILRGSGKQEIEFKY
MNDRGDVVIRKHPFEGIINNMERRFRETESNAVRDELSKYLNSQHCPDCNGSRLRLEARN
VFIADTPLTDIAELAISDALAFFENLNLSGQKAQIAEKILKEVCERLGFLVNVGLNYLNL
SRAAGTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLIHLRDLGNT
VIVVEHDEDAIRAADYVIDIGPGAGVHGGEIIAQGDVNDILACENSLTGKYLSGREGIEI
PKVRVPFDKNNVVELKGATGNNLKNVDLVIPNGLMTCVTGVSGSGKSTLINDTLFKLAHI
ALNGATTQEPAPYKEIIGLDLLDKVIDIDQSPIGRTPRSNPATYTGIFTAIREIFAATQE
SRSRGYKPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACNSKRYNRETLEVKY
KGKSIHEVLDMTIEDALTFFAPIPAINRKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL
SKELSKRDTGKTLYILDEPTTGLHFHDIKQLMHVIHRLRDHGNTVVVIEHNLDVIKTADW
IIDLGPEGGSGGGEILVSGTPEQVAKHKTSHTARFLKPLLEKQAAKKRK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacattgaagtacgtggcgctagaacgcataaccttaaaaacatcagcttagat
attcctagagaaaaattagtcgttattactgggctttcgggttcaggtaaatcttcactc
gcttttgatactttatatgcagaaggtcagcgacgctatgtcgagtcactttcggcttat
gctcgtcaatttttatcgatgatggaaaagcctgatgtcgatcacatagaaggcttatcg
ccggcaatttctattgaacaaaaatcaacgtcgcataatccacgctctactgtgggtact
attaccgaaatttacgattacttacgactactttatgcccgtgttggcgaaccacgttgc
ccgacccatcatcagcctttagcagcacaaacaaattcacaaatggtcgataaggtttta
gcgcttgaagaaggtactaaagtcatggtgcttgcacctgtattacaaggccgaaagggt
gagcatgttaaattactcgagaacctcgcatctcagggttatattcgagctaggatagat
ggcgaggtttgtgacttatctgatcctccaacattagaacttcacaaaaaacatacgatt
gaagtggttgttgaccgcttaaaagtaagagacgatattcaacttcgcttatccgaatct
tttgaaaccgcattaagtttaaccgcgggtaccgctaaagttgcctttatggatgaacct
gatcgagaagaattagtcttttcagctaattttgcttgttcaaagtgtggttatagcatg
caagagcttgagccgcgcttattctcattcaataatccagcaggtgcctgtaaaacctgt
gatggtttgggtaatcaacagttttttgactctgctcgtgttattactaaccctgaattg
agtttggcgggcggtgcaatacgtggctgggataaacgtaatttttactattttcaaatg
ctacaagcactgtctgatcattataaatttgcccttgataaaccttttgaaaagttatcc
aagagtgaccaagatttaatacttcgtggtagtggtaaacaagagattgaattcaaatat
atgaacgaccgtggtgatgttgttattcgtaagcacccgtttgaaggcataattaataat
atggaacgacgattccgtgaaacagaatctaatgccgttcgtgacgaattatcaaaatac
ttaaatagccaacattgcccagattgtaatggcagtcgtttacgccttgaagcgcgtaat
gtttttattgctgatacaccattaactgatattgccgagcttgctatttctgacgcctta
gcctttttcgaaaacttaaatttatcaggtcagaaagcacaaattgcagaaaaaattctt
aaagaagtgtgtgaacgtttaggcttcttagttaatgttggcttaaattacctcaattta
tcacgcgctgctggcaccttatcaggcggtgaagcacaacgtattcgtttagcaagccaa
ataggtgctggtttagttggcgtaatgtatgtattagacgaaccatcaattgggttacat
caacgcgataacgaacgtttattaaaaaccttgatccatttacgtgatttaggcaatacc
gtgatcgtggttgagcatgacgaagacgccatcagagccgccgattatgttattgatatt
ggccctggagccggtgttcatggtggtgaaattattgctcaaggtgatgtaaatgatatt
ttagcctgtgaaaattcactaacgggtaagtacctttcaggacgagaaggtattgagata
cctaaggttcgtgtaccttttgataaaaacaatgtcgttgaactaaaaggcgcaaccggt
aataatttaaagaatgttgatttagttatacccaatggtcttatgacctgtgtaaccggt
gtttcaggttcaggcaagtcgaccttgattaacgataccctatttaaacttgctcacatt
gctttaaatggtgcgacgacacaagaaccggcaccgtataaagaaattattggtttagat
ttacttgataaagttatcgatattgaccaaagcccgatagggagaacaccacgctcaaac
cctgcaacctatacgggtatatttaccgctattcgtgaaatttttgctgcgactcaagag
tcacgttcaagagggtataaacccggacgctttagctttaatgtaaaaggcgggcgttgt
gaagcttgccaaggcgatggattaatcaaagttgaaatgcatttcttacctgacgtttat
gttccttgtgatgcgtgtaattcaaaacgttataatcgtgaaacattagaagtaaaatat
aaaggcaagagcattcatgaagtgcttgatatgacaatcgaagacgctttaacttttttt
gcacccatcccagctattaatcgtaaattacaaacgttaatggatgttggtttaagttat
attaaattaggtcagtctgccacgaccctttcaggtggtgaggcacaacgggttaaatta
tcaaaagagctatccaaacgtgatactggtaagaccctctatattcttgatgaaccaacc
acaggtttgcattttcacgacatcaaacaactgatgcatgttatccatcgtttgcgtgac
catggcaatactgttgttgttatagagcataacttagacgtaataaaaacagccgattgg
attattgatttaggccctgaaggtggctctggtggtggtgaaatattggtttctggtaca
cctgaacaggttgctaaacacaagacatcacataccgcgaggttcttaaaacctttactc
gagaagcaagcagctaaaaagcgtaaataa
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