Colwellia sp. PAMC 20917: A3Q34_17400
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Entry
A3Q34_17400 CDS
T04511
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_17400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_17400
03009 Ribosome biogenesis [BR:
coz03009
]
A3Q34_17400
Enzymes [BR:
coz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A3Q34_17400
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3Q34_17400
Ribosome biogenesis [BR:
coz03009
]
Prokaryotic type
rRNA processing factors
A3Q34_17400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Extensin_1
S1
DUF7351
Motif
Other DBs
NCBI-ProteinID:
AOW78462
UniProt:
A0A1D8RZC9
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All DBs
Position
complement(4059017..4062265)
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHQQKKSNIYKAKITRIEPSLEAAFVDY
GAERHGFLPMKEIAREYFPKGYTFQGRPNIKEVLREGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTDLKTSLNKLELPKGMGLIVRTAGVGKDYEEL
DWDLNVLLHHWKAISEAAETKPAPFLIHQETNVILRAIRDYLRRDIGEVLIDRPKTFESV
KKHIEVVRPDFLSKIKLYTNDVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEAMTS
IDVNSARATKGSDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVKQDRARIQLGRISRFGLLEMSRQRLRPSIGETSQGVCPRCNGTGHVRSVESLAL
SILRLMEEEAIKENTQHVQAQVPVPVATYLLNEKRRSVFHIEKHHGVNILIIPNPHMDTP
QYEVIRVRTDESVEEASYERTITEASVEEAVMPKFDKQAAKRDEPALQGMSSPKQSAPLT
AVKPVAPVAPVKASAGLFDGLIKWGKSLFAAEEEVAPKVVEPAKKPESNNSERRPQRGRQ
GQRRNNNNRNENRNDNRNVNRNDKRNDTQNEDRADIKPVINDNKDNINDNKDNKPNKQPR
KAPVERNTKPKEEKTTVRRQRRNNSKKVRIVDENSTVVNNAALSKIAAEEKAQVVATIDE
ALTVETVVTQADATQPELSETKTSDEQRPRNRRSPRHLRSNGQRRRQPAENQAVDVNAAA
VTTEVSEDPVEARYPETPVVEAPVVQTPVAETPVVETPVAETPVVEAPVVEAPVAEAPVV
ETPVVEAPVVEAPVAEAPVVETPVVETPVVETPVVETPVVEAPVVEAPVVEAPVVETPVV
EAPVVEAPVVEAPVVETPVVEAPVVETTVVTTPVVETTIVETTTVDTPADEKPAVETTVV
ETTTVETTVVETTTVETSKAEVQQDLPFDEPQVAEQEVEKPKRVISRKPSPKVSSKAGKV
SSKGSKPGKSSAPMTKTESITTMNEVPTDFVASEDRVKHASSGKMARVSNAVSRSGAGPT
KP
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaacgctacacaatcggaagagttacgtgtagcacttgtcgat
ggtcaacaactttatgatttagatatcgaaagtcctggtcatcaacaaaagaaatcaaat
atttataaagcaaaaatcacgcgtatagagccgtctctagaagctgcatttgttgactat
ggcgcggaacgtcatggtttcctaccgatgaaagaaatcgcacgcgaatatttccctaaa
ggttatacctttcagggtcgtccaaatatcaaagaagtcttgcgcgaaggccaagaagtt
atagttcaaattgataaagaagaacgcggccagaaaggcgcagcgttaacgactttcatc
agtttagccggtagttacttggtattaatgccaaataatcctcgtgctggtggtatttct
cgtcgcattgaaggcgatgaacgcacagatttaaaaacctctttaaacaaattagaatta
cctaaaggcatgggcttaattgttcgcactgctggtgttggtaaagactatgaagaatta
gactgggatttaaacgttcttttacaccattggaaagccatttcagaagcggcagaaact
aaacctgctcccttcctaattcaccaagaaactaacgttatccttcgtgctattcgtgac
tatttacgccgcgatatcggtgaagtattaattgatcgcccgaaaacattcgaaagtgtt
aaaaaacatatagaagtggttcgtcctgatttcttaagtaaaataaaactctacacgaac
gatgttcccctatttacccattaccaaattgaaacacaaatcgaatctgcgtttcagcgt
gaagtaagacttccttctggtggctcaattgttattgacccaactgaagcgatgacatca
atcgatgttaactctgcccgcgcaactaaaggtagtgatatagaagagaccgcatttaac
actaacttagaagctgctgaagaagttgctcgtcaattacgtttacgtgatttgggtggt
ttagtggttattgattttattgacatgacacctgtgcgtcatcaacgtgaagttgaaaat
cgcatgcgtgatgctgtaaaacaagatagagctcgtattcaattaggtcgaatttctcgt
tttggtttattagaaatgtcgcgtcaacgtttacgcccttctatcggtgaaactagccaa
ggcgtttgtcctcgttgtaatggtactggacacgtacgtagtgttgaatcattagccttg
tctattttgcgtttaatggaagaagaagccattaaagaaaatacgcaacatgtacaagct
caagtacctgtacctgtagcgacttatcttttgaatgaaaagcgtcgttcagtatttcat
atcgaaaaacatcacggcgttaatattcttattattcctaatcctcatatggacacacca
caatatgaagtcattagagtaagaaccgacgagagtgttgaagaagcaagctacgaaaga
accattactgaagcttcagttgaagaagctgtaatgcctaaattcgataagcaagccgct
aaacgtgacgagccagccttacaaggcatgtcttcacctaagcaatcagcaccgttaacc
gccgtaaaacctgtagcgcctgtagctccagtaaaagcatctgcgggcttatttgatggt
ttaattaagtggggtaaatcactcttcgctgctgaagaggaagttgcacctaaagttgtt
gaacctgcaaagaaacctgaaagcaacaacagtgaacgtcgtccgcaacgtggtcgtcaa
ggtcaacgtcgtaacaataataatcgtaacgaaaaccgcaacgataacagaaatgttaat
cgtaacgacaaacgtaatgatactcaaaatgaagaccgtgctgatatcaagccagtcatt
aatgacaataaagacaacattaatgacaataaagataacaagccgaataaacagcctcgt
aaagcgccagtagagcgtaatactaagcctaaagaagaaaaaactacagtacgtcgtcaa
cgtcgtaacaacagtaaaaaagtacgtattgttgatgaaaactcaacggttgttaataac
gctgcgttaagcaaaatagccgcagaagaaaaggctcaagtagtcgcgactatcgatgaa
gcgttaaccgttgaaactgtagttacacaagccgatgcaacacagccagagcttagtgag
actaaaactagtgatgaacagcgtcctagaaaccgtcgttcgcctaggcatttacgctct
aatgggcaacgtcgtcgtcaacctgctgaaaatcaggcagttgatgttaacgcagcagca
gtaacaactgaagttagtgaagaccctgttgaagcaagatatcctgaaacgccagtagtt
gaagcaccagtagttcaaacacctgttgctgaaacacctgttgttgaaacgcctgttgct
gaaacacctgttgttgaagcgcctgttgttgaagcgcctgttgctgaagcacctgttgtt
gaaacgcctgttgttgaagcgcctgttgttgaagcgcctgttgctgaagcacctgttgtt
gaaacacctgttgttgaaacgcctgttgttgaaacgcctgttgttgaaacgcctgttgtt
gaagcacctgttgttgaagcgcctgttgttgaagcacctgttgttgaaacgcctgttgtt
gaagcgcctgttgttgaagcgcctgttgttgaagcacctgttgttgaaacgcctgttgtt
gaagcgcctgttgttgaaaccacggtagttacaacaccggtagttgaaacaacgatcgtt
gaaacgaccacggttgatacaccggcagatgaaaagccagcagttgaaacaacggttgta
gaaacaacgacggttgagacaacagtcgttgagacaacgactgttgaaacaagcaaagca
gaagttcaacaagatttaccttttgacgaacctcaagttgcagagcaagaagttgaaaaa
ccaaagcgcgttatttcaagaaaaccaagccctaaagtaagctcaaaagcagggaaagtt
tctagtaaaggtagtaagccaggtaaatcatctgcgccaatgactaaaacagaatcaatt
accaccatgaatgaagttcctacggacttcgttgctagtgaagatcgtgtcaagcatgct
tcatcgggtaaaatggcaagagtatctaacgcagtaagtcgtagtggtgcaggtccaact
aaaccatag
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