Colwellia sp. PAMC 20917: A3Q34_17835
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Entry
A3Q34_17835 CDS
T04511
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q34_17835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coz03019
]
A3Q34_17835
Enzymes [BR:
coz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3Q34_17835
Messenger RNA biogenesis [BR:
coz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q34_17835
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOW78538
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All DBs
Position
4171521..4172840
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AA seq
439 aa
AA seq
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MTSISPPTQFTELGLIPPLLARLTELEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTA
TFALPLLQHIFLQLSADTTSNSKSNKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAI
KTVAVFGGVSVNTQMLALRGGADILVATPGRLLDLISSNAIKLDLVKTLVLDEADRMLSL
GFTEELSALLALLPKKKQILLFSATFPEQVKALTQELLNNPIEIQVQSADASTLVQRVFS
VNKGEKTAVLAHLIAENEWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQGERSR
VLDGFKAGEIDVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAL
SLIDHEDFHHFSIIEKKNKIRLEREQVKGFEADEVSNDSITAAEKPMAKPEGTGKKKRKK
KGSVKTINADIWAGYSEAE
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacctctatttcacccccaacccagtttacagaacttggtcttattcccccattatta
gctcgattaactgagttggaatatctgcagcctacgcctattcaggcacaagctattcca
agtgttttagcaggacgtgacttaattgcaggggcaaataccggttcaggtaaaacagcc
acctttgcattacctcttttgcagcacatttttttacaactgtctgctgatacaacctca
aatagcaagagtaacaagggtaattatgttacagggcttattttagtgcctacgcgtgaa
ctcgctaaacaagtagcagacagcattaaatcttatgccgtgcatttcaatggtgcgata
aaaacggtcgctgtttttggtggtgtatccgtgaatacacaaatgctggcattgcgaggt
ggcgccgatattctggtggcaacaccgggtcgattactcgatttaatttcaagtaatgcc
attaagcttgatttagttaagaccttagtccttgatgaagccgataggatgttaagctta
ggttttaccgaagaattatctgcgctgttagccttattacctaagaaaaaacaaatatta
ttattttcagcaacctttcccgaacaagtaaaagcgctaacccaagaattacttaacaac
ccgattgagatacaagttcaaagtgctgatgcaagtacgctagttcagcgtgtctttagc
gttaataaaggtgaaaaaaccgcagtgttagcacatttaattgcagaaaatgaatggcga
caagcgctcatctttgttaatgctaaacaccattgtgagcatttagctgaaaaacttgct
aaacgcggtattaccgcggcagtgtttcatggtgataaaggtcaaggcgaacgaagtagg
gtgcttgatggctttaaagctggcgagattgacgtgctcatcgctacagatatagccgct
cgcggactcgacattgaaaagctgccagtggttattaatttcaacttaccgagaagtccg
tcagactacatgcatcgtattggtcgaagtggccgtgctggtgaagtgggtctggcttta
tcattaattgaccatgaagactttcatcactttagtatcattgaaaagaaaaataaaatt
cgtcttgaacgtgagcaagtcaaaggttttgaagccgatgaagtcagtaatgattcaatt
actgccgcagagaaacccatggcaaagcctgaaggcacaggaaagaaaaagcgtaaaaag
aaagggtcggtgaaaaccataaacgctgatatttgggcgggttatagcgaagcagagtag
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