Companilactobacillus pabuli: G6534_08575
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Entry
G6534_08575 CDS
T07234
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpab
Companilactobacillus pabuli
Pathway
cpab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6534_08575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpab03019
]
G6534_08575
03009 Ribosome biogenesis [BR:
cpab03009
]
G6534_08575
Enzymes [BR:
cpab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6534_08575
Messenger RNA biogenesis [BR:
cpab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6534_08575
Ribosome biogenesis [BR:
cpab03009
]
Prokaryotic type
rRNA helicases
G6534_08575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
CMS1
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
QMT84669
UniProt:
A0A7L7KYW8
LinkDB
All DBs
Position
complement(1753805..1755328)
Genome browser
AA seq
507 aa
AA seq
DB search
MKFKELDLDPRLLSAVDEAGFEETTPIQAQTIPLVMTGADVIGQAQTGTGKTAAFGLPLL
NAVDTQSSDIQALIISPTRELAIQTQEELYRLGKEKKVKVQSVYGGSDIRRQIRALKNHP
QIVVGTPGRMLDHINRHTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLLF
SATMPKPIMKIADKFMSEPKVVKIKSKELTADKIEQYFVKAKDYEKFDLMTRLFDVQAPE
LALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENLTKK
RMEPLAPPTDKEVLKGQLESVKQDIKDTLEHDKHLDRFDSAVQELLAEYSPEDIARIFLS
ESIKDAETVPVKIAPERPLPSRKVSHSRSGHGRRGRYNGHRGGNNDHRRRRNNDRRDDKK
GGKRRENDNRRHGRSKKSFKIRTNLEK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaaagaattagatttagatcccagattattgagtgccgtagacgaagccggt
tttgaagaaactacacctattcaagctcaaactattccactagttatgactggcgctgac
gttatcggtcaagctcaaactggtacaggtaagacggcagcctttggcttaccattgcta
aatgccgttgatactcaatctagcgatattcaagcattgattatctcaccaactagagaa
ttagctatccaaacacaagaagaattgtatcgtttgggtaaagaaaaaaaagttaaggtt
caaagtgtttacggtggttctgatatcagacgtcaaatccgtgcattgaagaatcatcct
caaattgttgtcggaacaccgggtagaatgctcgatcatatcaaccgtcatactttgaag
ttgcacaacgttaagacagttgttcttgatgaagctgatgaaatgctagatatgggattc
gttgaagatatcgaaagtattctttctaacgttcctaacaagcatcaaacattgttattc
tcagctacaatgccaaagcctatcatgaagattgctgataagtttatgagcgaacctaag
gtagttaagatcaagtcaaaagaattaactgctgataagatcgaacaatactttgttaaa
gctaaagattatgaaaaattcgacttgatgactcgtttattcgatgttcaagctccagaa
ttagctttaatctttggtcgtactaagagacgtgttgatgaattaactcgtggcttgcaa
gctcgtggttacaacgctgaaggtattcacggtgacttgtcacaagacaaacgtactagt
gtattacgtaagttcaaggctggtaagttagacttcttagttgctactgatgtggctgct
agaggtttggatatttcaggtgtatcacacgtttacaactatgatattcctcaagatcct
gatagttatgttcaccgtattggacgtacaggacgtgccggacattctggtgtgtcagta
acatttgttacacctaacgaaatgggttacttacgtacaatcgaaaacttaactaagaaa
cgtatggaaccacttgctccacctactgataaagaagttcttaagggacaacttgaatca
gttaagcaagatatcaaggatactttggaacatgacaagcatcttgatcgtttcgattca
gctgttcaagaattacttgctgaatactcaccagaagacattgctcgtattttcttgagt
gaatcaattaaggatgccgagacagttcctgttaagattgctcctgaaagaccacttcca
tcaagaaaagttagtcacagtcgttctggccatggtcgtcgtggtagatataacggtcac
cgtggtggtaacaatgatcaccgtcgtcgtcgcaacaatgaccgtcgtgatgacaagaag
ggtggcaagcgccgcgaaaatgacaacagacgtcatggtcgcagcaagaagtcattcaag
atcagaactaatctagaaaaataa
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