Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c20310
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Entry
CPAST_c20310 CDS
T03811
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPAST_c20310 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpae03019
]
CPAST_c20310 (pnp)
03016 Transfer RNA biogenesis [BR:
cpae03016
]
CPAST_c20310 (pnp)
Enzymes [BR:
cpae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CPAST_c20310 (pnp)
Messenger RNA biogenesis [BR:
cpae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPAST_c20310 (pnp)
Transfer RNA biogenesis [BR:
cpae03016
]
Prokaryotic type
tRNA degradation factors
CPAST_c20310 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
KH_2
EXOSC1
APMV_polyA_pol_cat_2nd
GcvP2_C
S1_RRP5
DUF5420
Caulimovir_coat_dom
Dynein_light
Motif
Other DBs
NCBI-ProteinID:
AJA48101
UniProt:
A0A0H3J2E7
LinkDB
All DBs
Position
complement(2174847..2176958)
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AA seq
703 aa
AA seq
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MNHVLEATVAGRKMKVEFGKIGMLSDCAIFMSYGETVILVNANASEAPRDGIDFFPLSVE
YEERLYSVGKIPGGFIKREGKPSEKAILHARAIDRPLRPLFPKGYRNDVQIVCTVVSVDQ
DNVPDILAMNGASMALCLSSIPFTTPVGTVSVGMIEDKFILNPTEEEREKSVLNLTVCAT
KERVMMIEAGGNEIPEDVMINAIEFGFNACQEIVAFQEEAMKQFGKEKVEPVLHKVDKNI
EEDVKSFAFDMLKEAMYITDRDKRNEILKDINEKIQEEFEEKYPDNSSEIGEVVYSVQKE
VVRNMLLHEERRPDGRSFDEVRKISCDVGILPRTHGTGLFTRGLTQVMTVATIGALGDVQ
ILDGLGTEESKRYMHHYNFPSYSTGEVRPLRGPGRREIGHGALAEKALEPLIPSEEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSEEKVITDI
QGLEDFFGDMDFKVAGTEEGITSIQVDTKIHGLSKNCIGQAIKGARKARLFILEKIKQCI
PDPREELSPYAPRAYTINIHPDKIRDVIGAGGKTINKIIAETGVKIDINNDGKVFVMSSD
GESANKALKMIDDLTRDVKAGDIYLGKVTKITNFGAFVEILPGKEGLVHISKLDVNRVNK
VEDIVSTGDEILVKVTEIDNQGRINLSRKDAIVQSKADEDKKE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgtacttgaagccactgtggctggcagaaagatgaaggtggaatttggaaaa
ataggtatgctttcagattgtgctatttttatgagctatggtgaaacggttattttagta
aatgctaatgcttcagaagcccctagagatggaatagatttttttccactaagtgttgaa
tatgaagaaaggttatattcagtaggtaaaatacctggaggctttataaaaagagaaggt
aaaccatcagaaaaagctatattacatgctagagctatagatagacctttaagaccactt
tttcctaaaggctatagaaatgatgttcaaattgtgtgtacagtagtatctgttgatcaa
gataatgttccggatatattagctatgaacggtgcatcaatggcactatgtctatcatct
attccattcactacaccagtaggaactgtatctgtgggaatgattgaagataaatttata
ttaaatcctactgaggaagaaagagaaaaaagtgtattaaatctaactgtttgtgctaca
aaagaaagagtaatgatgattgaagcaggtggaaatgaaataccagaggatgtaatgata
aatgctatagagtttggatttaatgcttgccaggaaattgttgcgttccaagaagaggca
atgaagcagtttggtaaggaaaaagttgaacctgtattgcataaagtggataaaaatata
gaagaggatgtaaaaagttttgcctttgatatgttaaaagaagctatgtatattactgat
agagacaaaagaaatgaaattttaaaggatataaatgagaaaattcaagaagaatttgaa
gaaaaatatccagataacagttctgaaataggtgaagtggtatattcagtacaaaaagaa
gttgttagaaatatgttacttcatgaagaaagaagaccagatggaagaagttttgatgag
gtaagaaagattagctgtgatgtaggaatattaccaaggactcatggaacaggattgttt
acaagaggattaactcaagttatgactgttgcaactataggtgccctgggagatgttcag
attttggatggacttggaacagaagaatcaaagagatatatgcatcactataatttccct
tcttattctactggtgaggttagaccattaagaggacctggaagaagagaaattggtcat
ggagctctggcagaaaaagctttagaaccattaattccttcagaagaggaattcccatat
acaataagattggtttcagaagttttaagttctaatggttcaacttctcaggcaagtgtt
tgtggaagtactttagctcttttagatgcaggagttcctataaaaaggcctgcagcaggt
atagctatgggccttataactagtgaagatttatcagaagaaaaagttattacagatata
caaggattagaagatttttttggagatatggattttaaggtggcaggtacagaagaagga
ataacttctatccaagtggatacaaaaattcatggactttcaaaaaattgtataggtcag
gctataaaaggcgcaagaaaagctagactttttatactggaaaaaataaaacaatgtatt
ccagatccaagggaagaattatctccttatgctccaagagcttatactataaatatacat
ccagataaaattagagatgttataggtgctggtggaaagactataaacaaaattatagct
gaaactggagtaaaaatagatataaataatgatggaaaagtttttgttatgtctagtgat
ggtgaaagtgccaataaagctctcaaaatgatagatgatcttactagagatgtgaaggca
ggagatatatatcttgggaaagttacaaagataactaattttggagcttttgtggaaata
ttaccaggaaaagaaggccttgttcacatttcaaaacttgatgtaaatagagtaaataag
gtagaggatatagtatctacaggagatgaaatattagtaaaagtaactgaaatagataat
caaggtagaattaatctttcaaggaaagatgctatagttcaatctaaagcagacgaggat
aaaaaagaataa
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