Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c20530
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Entry
CPAST_c20530 CDS
T03811
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpae03032
]
CPAST_c20530 (topA)
03400 DNA repair and recombination proteins [BR:
cpae03400
]
CPAST_c20530 (topA)
Enzymes [BR:
cpae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CPAST_c20530 (topA)
DNA replication proteins [BR:
cpae03032
]
Prokaryotic type
DNA Topoisomerases
CPAST_c20530 (topA)
DNA repair and recombination proteins [BR:
cpae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CPAST_c20530 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
DmmA-like_C
Toprim_2
PUA_4
Motif
Other DBs
NCBI-ProteinID:
AJA48123
UniProt:
A0A0H3J899
LinkDB
All DBs
Position
complement(2196081..2198165)
Genome browser
AA seq
694 aa
AA seq
DB search
MGQNLVIVESPAKAKTIGKYLGSKFTVEASMGHVRDLPKSTLGVDVENDYNPRYITIRGK
GELLDKLRRKAKKSDKIYLATDPDREGEAISWHLAKVLKIEEDKKCRIVFNEITKNAIKS
AIKKPRIVDSNLVNAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMICDRQK
AIDEFKPEEYWSIECLLSKSARNKPFLVKLHSANNKKISIGNKEETDNIIKELEKNDFLV
KDIKKSTKNKNPLAPFTTSTLQQDAYKRLNFSTKKTMSIAQILYEGVEIKGHGTIGLITY
MRTDSVRISEESQNNAKEYIKSNFGEEFIPKAPRNFKGKKNIQDAHEAIRPTYIDVTPEE
ARSSLKDDQFKLYNLIWNRFMASQMASCVMNTITLIIENGIYSFRATGSSIKFPGFMKVY
NYTSDEENDDIKIPDLNKEDILYKKEIKGNQHFTQPPAKFSEASLVKTLEENGIGRPSTY
APIISTLLDRKYIERDKKTLNPTELGNIVNNIVSEYFKEIIDIEFTAEMEHKLDNIEEGK
ENWNKVVDEFYKPLEVSIDIAEKEVSKITIEDEVTDIKCDKCGKFMVIKHGRFGDFLACP
GYPECKNTKPIVQELDVACPKCSGKILVRKSRKGRKFFGCSNYPECDFVSWFEPTNEKCE
KCGSYMVKKYNKTKGDYLECSNQECKNKKFNKTS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaaatttagttattgtagaatcaccggctaaagctaaaactataggtaaatat
ttaggaagtaaatttactgtggaagcttcaatgggtcacgttagagatttacctaaaagc
actttaggggttgatgtagagaatgattataatcctagatatataacaataagaggaaaa
ggtgaacttttagataaacttagaaggaaggcaaaaaagagtgataaaatatatcttgct
accgaccctgatagagaaggagaagctatatcatggcatttagcaaaagttttaaaaatt
gaagaagataagaaatgtagaatagtatttaatgagataactaaaaatgctataaaatct
gcaataaaaaaaccaagaatagtagactcaaatcttgtaaatgcacagcaggcacgtaga
gttttagatagattggtaggctataaaattagtcctatactatggagaaaagtaaagtgg
ggattaagtgctggtagagttcaatctgtagctctaaagatgatatgtgaccgtcaaaaa
gctatagatgaatttaaacctgaagaatattggtctatagaatgtctattaagtaagagc
gctagaaataaaccttttttagtgaaacttcattctgctaataataaaaagatttccata
ggcaataaagaagagacggataatattattaaagaattagaaaaaaatgattttttagta
aaagatataaaaaaatccactaaaaacaaaaatcctttggctccatttactaccagtaca
ttgcaacaggatgcatataaaagattgaatttttctactaaaaaaactatgtctatagct
caaatattgtatgaaggagttgaaataaaaggtcatggaactataggattaataacttat
atgagaacagattccgtaagaatatcagaagaatcccaaaataatgctaaggagtatata
aagtctaattttggagaagaatttattccaaaagctccaagaaattttaaaggcaaaaaa
aatatacaagatgctcatgaagcaattagacctacctatatagatgttacaccagaagaa
gctagatcaagtcttaaggatgatcaatttaaattatataacttgatttggaatagattt
atggcaagtcagatggcatcctgtgttatgaatactattactctaattatagaaaatgga
atctattcttttagagcaactggatctagtattaaatttcctggatttatgaaggtatat
aattatacttctgatgaggaaaatgatgatattaaaattcctgatttaaacaaagaggat
atattatataaaaaagagatcaaagggaaccagcattttactcagcctccagcaaaattt
tctgaagcatccttagtaaagacccttgaagaaaatggtattggaagaccaagtacttac
gcacctattatatccacattacttgacagaaaatatattgaaagagataaaaaaacatta
aatcctacggaacttggtaatatagtaaataatattgttagtgaatactttaaagaaatt
attgatatagagtttactgctgaaatggaacataagctagataatatagaagaaggtaaa
gaaaactggaataaggtagtagacgaattttataaacctttggaagtttcaatagatata
gcagaaaaagaagtatctaaaattaccattgaggatgaagtaactgacattaaatgtgat
aaatgtgggaaatttatggttattaagcatggacggtttggagattttctagcatgccca
ggatatcctgaatgtaaaaatacaaaaccaatagttcaggagttagatgtagcctgtcca
aaatgtagtgggaaaatattggtaagaaagagcaggaaaggtagaaaattttttggatgc
agcaattatcctgaatgtgactttgtaagttggtttgagccaactaacgaaaaatgcgaa
aaatgcggctcctacatggtgaaaaagtacaataagacaaaaggagactatttagagtgt
tcaaatcaagaatgcaaaaataaaaaatttaataaaacatcttaa
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