Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c21580
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Entry
CPAST_c21580 CDS
T03811
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CPAST_c21580
09124 Replication and repair
03420 Nucleotide excision repair
CPAST_c21580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpae03021
]
CPAST_c21580
03036 Chromosome and associated proteins [BR:
cpae03036
]
CPAST_c21580
03400 DNA repair and recombination proteins [BR:
cpae03400
]
CPAST_c21580
Enzymes [BR:
cpae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CPAST_c21580
Transcription machinery [BR:
cpae03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CPAST_c21580
Chromosome and associated proteins [BR:
cpae03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CPAST_c21580
DNA repair and recombination proteins [BR:
cpae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CPAST_c21580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
PDDEXK_1
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
AJA48228
UniProt:
A0A0H3J8H3
LinkDB
All DBs
Position
complement(2308000..2310354)
Genome browser
AA seq
784 aa
AA seq
DB search
MSSITNIKVSVRDLIEFVLRSGDLIFTFSGGSRNIDAIKIHQKIQNSSGDNYNSEVSISY
IILKDNISLEINGRIDGVIIGEKNIIIDEIKTTTNDLDNINEDYNDMHWAQVKCYAYFYC
VNKNLNTIDTRLTYYQMDSGAIKYLLKSYSIEELEKFFMGIIDKYIYWAKLQKNWIEVRD
SSIKRILFPYGEYRLGQRKLAVAVYTSIKENKKIFIKAPTGIGKTMSTIFPACKALGEGI
ISKIFYATSKNITGKEVEKAFTLLNKKGLEFKVVWITAKDKICFNEERNCNPDLCDYAKG
HFDRVNNALKDILNENIITREVIEKYSSKYRVCPFELSLDLTDWCDCVVCDYNYIFDPKV
YLRRFFSEEGGDYCLLVDEAHNLVDRARDMYSAELYKKDILSLKNKCKGISSLLYKSLNK
INSYFIQEREKCEKNNLEIEVEKTSPKEIIPLLKSFIYQVEKFLAANEKSVIKEDILEIY
FTFNSFIRAYEIYNDKYVTYRQKLKDEVLLKIFCIDTSEVIGNCIKKAKAVVFFSATLTP
MNYFIYLLGGDKDSYRINLPSPFKRENLCLLLDDSVSTKYINRKYSYKNIISIIYRCITE
RKGNYFVFFPSYVYMKSVFDIFCERYSKINVICQKNSMNEDEKNSFLRLFSEKNEETLIG
FAVMGGVFSEGIDLAGEKLIGAIIVGVGLPKISLERNLIKEYFNENKRNGFLYSYVYPGI
NKVLQSAGRVIRTESDKGIIVLIDERYSENTYKKLLPAEWASIININNITKNLNNVIREF
WYKE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtattactaatataaaagtatcagtaagagatttaattgaatttgttttaaga
tctggagacttaatatttacttttagtggtggaagtagaaatatagatgcaattaaaata
catcaaaaaatacaaaacagttctggagataattataattctgaagtgagtatttcttat
attattctcaaggataatatttccttggaaataaacgggagaatagatggggttatcata
ggtgaaaagaatattataattgatgaaattaaaactactactaatgatttagataacata
aatgaagattataatgatatgcattgggctcaagtcaaatgttatgcttatttctattgt
gtgaataaaaatttaaatactattgatacgagattaacttattatcaaatggattctggt
gcaataaaatatttacttaaatcttacagtatagaagaattagaaaagttttttatgggt
attattgataaatatatatattgggcaaaactgcaaaaaaattggatagaagtaagagat
tcatctataaaaagaatattgtttccctatggagaatacagactgggtcaaaggaagttg
gctgttgctgtatatacttcaattaaagaaaataaaaaaatatttataaaagcacctaca
ggtataggaaagaccatgtcaactatttttcctgcgtgtaaagctctgggtgaaggaatt
atatcaaaaatattttatgcaacatctaaaaatattacgggtaaagaagtagaaaaggcc
tttactctattaaataaaaaaggtcttgaatttaaagttgtatggattacagcaaaggat
aaaatatgttttaatgaagaaagaaattgtaatccagatttatgcgattacgctaaggga
cattttgacagagtaaataatgctttaaaagatatactgaatgaaaatataattactaga
gaagtaatagaaaaatatagtagtaaatatagagtttgtcctttcgaattatctttagat
ctgacagattggtgtgattgtgttgtttgtgattacaattatatttttgatcctaaagtt
tacttaagaagatttttttcagaagaaggaggggattattgtctccttgtagatgaggct
cataatttagtagatagagcaagagatatgtattcagcagagctgtataaaaaagatatt
ttaagtttaaaaaataaatgtaagggtatatcttctttactttataaaagtttaaataaa
ataaactcatattttatacaagaaagagaaaaatgcgaaaaaaacaatttagagatagaa
gtagaaaaaacttctccaaaggaaataattcctttattaaaaagttttatatatcaggta
gaaaaatttttagcagcaaatgaaaagagtgttattaaagaagatatattagaaatttat
tttacttttaattcttttataagagcttatgaaatttataatgataaatatgttacttat
agacagaaacttaaggatgaagtattactaaagattttttgtattgatacttcagaagta
ataggaaactgtataaaaaaggcaaaagctgttgtgtttttttcagctactttaactccc
atgaattactttatatatttattgggaggagataaagattcttataggattaatttgcca
tccccttttaaaagagaaaatttatgtctcttattagatgatagtgtatctaccaaatat
attaacagaaaatatagctataaaaatataatttctataatatatagatgcataactgaa
agaaaaggaaactattttgtgttttttccttcatatgtgtatatgaaaagtgtttttgat
atattttgtgaaagatatagtaaaattaatgtaatttgtcagaagaatagtatgaatgaa
gatgaaaaaaacagttttctccgacttttttctgaaaagaatgaagaaacattaattgga
tttgcggtaatgggaggagtttttagtgaaggaattgatttagctggagaaaaattaatt
ggtgctattattgttggagtaggactccctaagatatctttagaaagaaatttgattaaa
gaatattttaatgaaaataaaagaaatggttttttatattcttatgtttatccaggcata
aataaagttttgcaatctgcaggaagagtaataaggactgaaagtgacaaaggtattatt
gtattaatagatgaaaggtattctgaaaatacctacaagaaactattaccagcagaatgg
gccagcataataaatataaataatataaccaaaaacttaaataatgttattagagaattt
tggtataaagaataa
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