Clostridium pasteurianum DSM 525 = ATCC 6013: CPAST_c32980
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Entry
CPAST_c32980 CDS
T03811
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpae
Clostridium pasteurianum DSM 525 = ATCC 6013
Pathway
cpae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPAST_c32980 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpae03019
]
CPAST_c32980 (dbpA)
03009 Ribosome biogenesis [BR:
cpae03009
]
CPAST_c32980 (dbpA)
Enzymes [BR:
cpae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPAST_c32980 (dbpA)
Messenger RNA biogenesis [BR:
cpae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPAST_c32980 (dbpA)
Ribosome biogenesis [BR:
cpae03009
]
Prokaryotic type
rRNA helicases
CPAST_c32980 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
DHFR_1
Terminase_3
Motif
Other DBs
NCBI-ProteinID:
AJA49364
UniProt:
A0A0H3J7B1
LinkDB
All DBs
Position
complement(3552021..3553460)
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AA seq
479 aa
AA seq
DB search
MENFCKFNISKRILLSLEKLGYKNPTEVQKEVIPLVLKNKDIIVQSETGSGKTASFGIPI
CEKIQIENNIIQSLVITPTRELCVQIKEDMSNIGRFKKVRCAAIFGKQTFSSQVRELKQR
VHVVVGTPGRILDHMDRGTINLTEIKYLVIDEADEMMNMGFIEQVTNIINKLPEKRVTML
FSATMSEQVNLLCKKYMKEAITININSEKPITERIEDYYYIVEGKDKFDLLQKVIYKELP
KSSIIFCNTRNNVDTLFNLLKDRGFSCISIHGGMLQEERLEAIRRFSRGEFTFLIATDIA
SRGIDIADITHVINYDMPFEKENYVHRIGRTGRAESNGKAISFLTPNQLRFLNEIEVYIN
RSVKLGEIPTIDEIEMGKKFFQGKSKNPIKLKREKNFELNKNISKIYINAGKKKKIRNID
IVGTISSIEGVNAEDIGIIDIQDNFSYVDILNGKASLVIEELKDRNMKGKKIRCEKAKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatttctgtaaatttaatataagcaagcggattttactatccttagaaaagttg
ggctataaaaatccaactgaggttcagaaagaagtaatacctttagttttaaagaataaa
gatataatagtacaatctgaaacgggcagcggaaagactgcttcttttggaataccaata
tgtgagaagatacaaatagaaaacaatattatacagtcattagtaatcacacctacaaga
gaattgtgtgttcagattaaagaagatatgtctaacataggaagatttaaaaaagttaga
tgtgctgccatttttggtaaacaaacattttcatctcaagttagggaattgaaacaaaga
gttcatgtagtagtgggaacaccgggaagaatattggatcatatggatagaggaactata
aatttaacagaaataaaatatttagttattgatgaagctgatgaaatgatgaatatggga
tttatagagcaggttacaaatataatcaataaattacctgaaaagagagtaactatgctg
ttttctgctaccatgtcagagcaagtaaatttactttgtaagaaatatatgaaagaagct
attacaataaatataaactctgaaaagccaataactgaaagaatagaggattattattat
attgttgaaggaaaagataaatttgatttactacaaaaagttatatataaggagctgcct
aaaagtagtattatattctgtaacactagaaataatgtagatactctatttaatttatta
aaggatagaggattctcttgtatttctatacatggaggtatgcttcaagaggagagattg
gaggcaattagaagattcagtagaggggaatttacttttttgatagctacagatattgca
tctagaggaattgatatagctgatataacccatgtaataaattatgatatgcctttcgaa
aaagaaaattatgttcatagaataggaagaactgggcgtgctgaaagtaatggcaaagcc
ataagttttttgactcccaatcaactaagatttctaaatgaaattgaagtatatattaat
agaagtgtaaaattaggagaaattccaacaatagatgaaattgaaatgggtaaaaagttt
tttcagggtaaatctaaaaatcctattaaattaaaaagagaaaaaaattttgaattaaat
aaaaatatatctaaaatatatataaatgctggtaaaaagaaaaaaattagaaatatagat
attgttggaactatttctagcatagaaggtgttaatgctgaagatataggtataatagat
atacaggacaatttttcatatgttgatatattaaatggaaaagcttctttagtaatagaa
gaattaaaggatagaaatatgaaagggaaaaaaatcagatgtgaaaaggctaaaaaataa
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