Caminibacter pacificus: C6V80_07190
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Entry
C6V80_07190 CDS
T06023
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cpaf
Caminibacter pacificus
Pathway
cpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6V80_07190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpaf03019
]
C6V80_07190
03016 Transfer RNA biogenesis [BR:
cpaf03016
]
C6V80_07190
Enzymes [BR:
cpaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C6V80_07190
Messenger RNA biogenesis [BR:
cpaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6V80_07190
Transfer RNA biogenesis [BR:
cpaf03016
]
Prokaryotic type
tRNA degradation factors
C6V80_07190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
QCI28756
UniProt:
A0AAJ4RBN3
LinkDB
All DBs
Position
complement(1344480..1346459)
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AA seq
659 aa
AA seq
DB search
MKEFAYKLVKGIDRKDIPRDKRDIINDLIALGIVTSGKIIQLKSKYRIGKVDVTKKGFGF
LIPIGVKEKDYLIEAHHLNGASKGDLVVAERLFNKKGRPKAKVVYILEKAFAYTVAYLTY
EFKNGKKQPVLKNIKTDMPIFVSEKKKTLKKLPDGAVFKVNNYTAKIEEVLGVLQDPWVD
EKISLALYNKKEEFSKKAIKEARAYGDYVDKSMYPDRMDLTDLPFCTIDPPTAKDHDDAI
YFDKEKNELYVAIADVSEYVYLNGNIDREAKERGFSIYFPHKAIPMLPRELSENICSLKE
HEDRLAFVFKITLNEKNEVVKEELFEAIINSHRKYSYDRVDEFLDGKFENIDDTDKEILE
WLMPLWDRVKNIRAQRLKTGLEFESDEIKMTLDENGMIKDVTLEKETPSHKLIEDCMLLA
NKAAAKMIDFGIFRVHDKPSQTSLDELYSELGALGIDVDVDEKDFTKVVEGIQSQAKEMG
IKKFVDKLIIRSQQQARYDATNTGHFALGFERYTHFTSPIRRYSDLTLHRILKATIKGEK
KILDYILRNVEALVVKLSELEREAMKVEWDFYDRKYARYADLHIGDVYKGIIEDTEIPPI
AKILEDKLLGARVFLKDKQKFNLFEKVDIEIVKANIATAKIKGKVKKEESESIIESGGE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatttgcttataagcttgttaaagggatagatagaaaagatatcccaagagac
aagcgtgatattataaacgatttgattgcgcttggaattgttacaagcgggaaaatcatt
caacttaaatcgaaatatagaatcggaaaagttgatgtaacaaaaaagggattcggattt
ttaattcctattggtgttaaagaaaaagactacctaatcgaagctcatcatctaaacgga
gcgagcaaaggggatttggtagtagccgagagattatttaacaaaaaaggaagaccaaaa
gcgaaagtcgtatatattttagaaaaggcttttgcttatacggtggcgtatttgacgtat
gaattcaaaaacggcaaaaaacagccggtattaaaaaatattaaaacggatatgccgatt
ttcgttagcgaaaagaaaaaaacattaaaaaaacttcctgacggagctgtatttaaggtc
aataattatacggcgaaaatcgaggaagttttgggtgtattgcaagacccatgggtagat
gaaaaaatttctcttgctttgtataacaaaaaagaggaatttagtaaaaaagctattaaa
gaggcaagagcatacggcgattatgtagataagtcgatgtatccggatagaatggatttg
accgatttgccgttttgtacaatcgaccctccgactgcaaaagaccatgacgacgcaatt
tatttcgataaagaaaaaaacgagctttatgtagctatagcggatgttagcgaatatgtt
tatctaaacggaaacatcgatagagaagcgaaagagagagggtttagtatctactttcct
cacaaagccataccgatgcttccaagagagcttagcgaaaacatttgttctttaaaagag
cacgaagacagacttgcgtttgtttttaaaattactcttaatgaaaaaaacgaagtggta
aaagaggagcttttcgaagctattataaactctcatagaaaatattcgtatgacagagtg
gatgagtttttggacggaaagtttgaaaatatcgacgataccgataaagagatacttgaa
tggttgatgccgctatgggatagagttaaaaatataagagctcaaaggctaaaaacaggt
cttgaatttgagagtgacgaaattaaaatgactcttgatgaaaacgggatgattaaagac
gttactcttgaaaaagagacgccgtctcataagctgatagaagattgtatgcttcttgca
aataaagcggcggctaagatgattgatttcggtattttcagagtacatgacaaaccgtca
caaacatcgcttgacgaactatatagtgagcttggggcactcggaattgatgttgatgtc
gatgaaaaagattttacgaaagttgttgagggtattcaatctcaagcaaaagagatgggt
ataaaaaaattcgtcgataaacttattatccgttctcaacaacaagcaagatacgatgca
acaaatacggggcatttcgctttgggatttgagagatatacacatttcacttcacctatt
agaagatattcggatcttacgcttcatagaattttaaaagcgactattaaaggtgagaag
aagattcttgattatattttaagaaatgtcgaagctcttgtggtgaaattaagcgagctt
gagagagaagctatgaaagtcgagtgggatttttatgacagaaaatatgcaagatatgca
gatttacacatcggagatgtttataaaggtataatcgaagacaccgaaattccgcctatt
gctaaaattcttgaagataaattattaggagcgagagtatttcttaaagataaacaaaaa
tttaatctttttgaaaaggtggatattgaaatcgtaaaagcaaatattgcaactgcaaaa
ataaaaggtaaagtaaaaaaagaggaatcagaaagtataatcgaatccggcggcgaataa
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