Caminibacter pacificus: C6V80_09920
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Entry
C6V80_09920 CDS
T06023
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cpaf
Caminibacter pacificus
Pathway
cpaf03410
Base excision repair
cpaf03430
Mismatch repair
cpaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C6V80_09920
03430 Mismatch repair
C6V80_09920
03440 Homologous recombination
C6V80_09920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpaf03400
]
C6V80_09920
DNA repair and recombination proteins [BR:
cpaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C6V80_09920
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C6V80_09920
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6V80_09920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
OAS1_C
Cas_Cas6_C
Motif
Other DBs
NCBI-ProteinID:
QDD68161
LinkDB
All DBs
Position
unnamed1:complement(35852..37456)
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AA seq
534 aa
AA seq
DB search
MKDKLREILNFLKSKKGENLTYKKSSLIEGAKKILNAANTDKKIVVVGDYDVDGIFSSFI
AWHFLYALYHKMGNSSNVELIFSNRDSGFGITYEEYQKLSNEYDLIITTDMGSDLPFLSQ
DIENLVVIDHHPTKNNYDYIINPNIQRSNISTSGGRVVYDIIEKLLLPNAKKIFNLPEFS
PPLNAYAQLAAVTLISDMANLTQNNREFIINALNDMKERVIVPMFSLLEEFNSLEISYKI
VSPINAYSRMEKNLDDIKQFINPASFKEFKEAHKKLQDNNKEKIKLVNYYYLDIIGNNNN
KNKIENEYFLFYFNPEMPTGLNGLIANKINSSFHKVSIIASQRNDEIVGSARGFNVKNLF
YLFGIPTLEFGGHNDACGFKLKKDFLNDFIKKIEELANTYHFEKQKFKAIIDKPLSMKEV
LELNKLYAQESQGVDFQEKITYPFSAELEIVGKFKNDYLLVKVGDKEHNDNTLMSLAEYE
YLKNKKILLGTLRTDGKIHIITGVNNEIELKNSISLFETEKIKIEKENSNLLNM
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaattaagagagatattaaattttttaaaatctaaaaaaggagaaaattta
acatataaaaaatcttctcttatagaaggagctaaaaagatattaaatgcggctaataca
gataaaaaaattgtagtagttggcgattatgacgtggacggaattttctcatcttttatt
gcttggcatttcttatatgctctttatcataaaatgggtaattcttctaatgtggagttg
attttttcaaatagagattcgggatttggtattacgtatgaagagtatcaaaaattatct
aatgagtacgaccttattatcactaccgatatgggaagtgacttgccgtttttatctcaa
gatattgaaaatcttgtagtaatagaccaccaccctacaaaaaataattatgattatatt
attaatccaaatatccaaagaagtaatatttccacttcagggggtagggtagtatatgac
attattgaaaagttattacttcctaatgccaaaaagatatttaatctgcctgaattttca
ccgccgcttaacgcctatgcgcaacttgctgcggtgactctgatttcggatatggcaaac
ttaacacaaaataatagagaatttattattaatgctctaaacgatatgaaagaaagagtt
atagtacctatgttttccttactcgaggagtttaactcacttgaaataagctataagatt
gtaagtcctataaatgcatattcaagaatggaaaaaaatttagacgatattaaacaattt
attaaccctgcttcttttaaagagtttaaagaagcacataaaaaacttcaagacaataat
aaagagaaaattaaacttgtaaattattactatcttgatattatcggcaataacaacaat
aagaacaaaatcgaaaatgaatatttcttgttttactttaaccctgaaatgcctacggga
cttaacggacttattgcaaataaaattaactcatctttccataaggtttcaattattgca
agtcaaagaaatgatgaaattgtaggctcggcaagaggttttaatgttaagaatctcttt
tatctttttggtattcctacgcttgaatttggaggacataacgacgcttgcggttttaaa
ttaaaaaaagactttttaaacgattttataaaaaaaattgaggagcttgcaaatacttac
cattttgaaaaacaaaagtttaaagcaattattgataaaccgcttagtatgaaagaagtt
ttggaattgaataaattatacgctcaagagtctcaaggggttgattttcaagagaaaata
acttatccgtttagtgcggagcttgaaattgtaggcaaatttaaaaatgattatttgctt
gtaaaagtgggggataaggagcacaacgacaatactttaatgtctcttgccgaatatgaa
tacttaaaaaataaaaaaattctcttagggactcttcgaactgacggaaaaattcatata
ataacaggagttaataacgaaattgagcttaaaaatagtatttctctctttgaaactgag
aaaataaaaattgaaaaagagaattcaaatttattaaatatgtag
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