Cellulomonas palmilytica: F1D97_08830
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Entry
F1D97_08830 CDS
T08423
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F1D97_08830 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpal03400
]
F1D97_08830 (recD)
Enzymes [BR:
cpal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F1D97_08830 (recD)
DNA repair and recombination proteins [BR:
cpal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F1D97_08830 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
AAA_22
UvrD-helicase
PhoH
AAA_16
AAA_28
SH3_13
nSTAND3
TraI_hel_assoc_N
NTPase_1
NPHP3_N
Phageshock_PspD
SRP54
SLFN-g3_helicase
DEAD
AAA_5
AAA
MeaB
NACHT
Mg_chelatase
DO-GTPase1
TrwB_AAD_bind
CbiA
DUF4774
AAA_7
RsgA_GTPase
ATPase
AAA_17
Motif
Other DBs
NCBI-ProteinID:
UJP38548
LinkDB
All DBs
Position
complement(1949820..1951658)
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AA seq
612 aa
AA seq
DB search
MSDLTTLVTPGADTGPDVPWRVTGLLAPFVAARVLTSADVHVARRVAGLCGEDDDRVRLA
AALAVRALRAGSVCVVLADARTLVEPAQDEDAQDEDTQDEGAVSPTAFVDLPWPDLDAWV
TAVRASPAVADGPDGPDDRPLRWAGGRLYLDRYWRDEVEVRSQVTQRLARVEVDEGRLEA
AVDRLFPSPDDERQRAALRTAATSRLTVLTGGPGTGKTTTVARLVAALQDVAGPGLRVAL
AAPTGKAAARLQESVNAEVAALALDADRERVGELRASTVHRLLGRRPGSSTRFRHHAGHR
LPHDVVVVDETSMMSLSLMARLLEAVRPQARVVLVGDAHQLASVEAGAVLGDLVVSLPHG
VVELTREHRFGRALADLARAIRDGDDERTVALLRAGGPSVEWVETVGDVATPTEVATLEA
DVRTTGRRLVTAARAGDADGALAALGEHRLLLAHRRGPAGVAHWAALAEEWVAQETGGRS
GAPFPPGRPLIVTSNDRATGLANGDTGVVVATPDGVAVAFATSDGHRLVPTHRLPPVQGV
HAMTVHRGQGSQFTRVSVLLPPATSPLLTRELLYTAVTRAREHLRVVGTQDAVRAAVRRR
VQRATGLGSPSA
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacctcaccactctcgtgacgcccggcgccgacaccggcccggacgtgccctgg
cgcgtcaccggcctgctcgcgccgttcgtcgccgcacgcgtgctcacctcggcggacgtg
cacgtggcgcgccgggtcgcgggcctgtgcggcgaggacgacgaccgcgtccggctcgcg
gccgccctcgcggtgcgggcgctgcgcgccgggtcggtgtgcgtcgtgctcgcggacgcc
cgcacgctcgtcgaaccggcgcaggacgaggacgcgcaggacgaggacacgcaggacgag
ggcgccgtctcccccaccgccttcgtcgacctgccgtggcccgacctcgacgcgtgggtc
acggccgtgcgggccagcccggccgtcgccgacggcccggacggccccgacgaccgcccg
ctgcggtgggccggcgggcgcctgtacctcgaccgctactggcgcgacgaggtcgaggtc
cgttcgcaggtcacgcagcggctcgcacgcgtcgaggtcgacgagggacggctcgaggcc
gcggtcgaccgactcttcccgtcccccgacgacgagcggcagcgcgccgcgttgcggacc
gcggcgacgtcccggctcacggtcctcacgggcggcccgggcacgggcaagacgacgacc
gtcgcgcgcctggtcgcggcgctgcaggacgtcgccggtcccgggctgcgcgtcgcgctc
gcagcgcccacgggcaaggccgccgcacgcctgcaggagtcggtcaacgccgaggtcgcg
gcgctcgcgctcgacgcggaccgcgagcgcgtcggcgagctgcgcgcgagcaccgtgcac
cgcctgctcggtcgtcgtccgggcagcagcacgcggttccgccaccacgccgggcaccgg
ctgccgcacgacgtggtcgtggtcgacgagacgtcgatgatgtcgctgtccctcatggcg
cgactgctcgaggccgtgcgcccgcaggcgcgcgtcgtgctcgtcggcgacgcgcaccag
ctcgcgagcgtcgaggccggcgcggtgctgggcgacctcgtcgtgtcgctgccgcacggc
gtcgtcgagctgacccgcgagcaccggttcggtcgcgcgctcgcggacctggcccgagcg
atccgcgacggcgacgacgagcgcacggtcgcgctcctgcgcgcgggcgggccgtcggtc
gagtgggtcgagaccgtcggcgacgtcgccacgcccaccgaggtcgcgacgctcgaggcg
gacgtgcgcaccacgggccgccggctcgtcaccgcggcgcgcgcgggcgacgcggacggc
gcgctcgcggcgctcggcgagcaccggctgctgctcgcgcaccgccgcggtccggcgggg
gtcgcgcactgggcggcgctcgccgaggagtgggtcgcgcaggagaccggcggccgctcg
ggtgcgccgttcccgcccggccggccgctcatcgtcacgagcaacgaccgggccaccggg
ctcgcgaacggcgacacgggcgtcgtggtcgccacgcccgacggggtcgccgtcgcgttc
gcgacctccgacgggcaccggctcgtcccgacgcaccgcctgccgcccgtccagggcgtg
cacgcgatgaccgtccaccgcgggcagggcagccagttcacgcgcgtgagcgtgctgctg
ccgcccgcgacctcgcccctgctcacgcgcgagctgctctacaccgccgtcacgcgagcg
cgcgagcacctgcgtgtcgtcgggacgcaggacgccgtgcgcgccgcggtacgacgccgc
gtgcagcgcgcgaccgggctcgggtcaccgtcggcctag
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