Cellulomonas palmilytica: F1D97_09820
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Entry
F1D97_09820 CDS
T08423
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1D97_09820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpal03019
]
F1D97_09820
Messenger RNA biogenesis [BR:
cpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1D97_09820
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UJP38713
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Position
2168893..2170578
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AA seq
561 aa
AA seq
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MSHPHPELTPPPPLPEGGLRVVALGGLGEVGRNMAVLEFGGRLLVVDCGVLFPEDHQPGV
DLILPDFDYIRDRLDDIEAIVLTHGHEDHIGAVPYLLRLRSDIPLVGSQLTLAFVEAKLK
EHRITPLTLAVREGQVEQLGVFDCEFVAVNHSIPDALAVAVTTPAGTVLHTGDFKMDQLP
LDGRITDLRAFARLGEKGVDLFMVDSTNAEVPGFVAPERGIGPVLDGVFAESSKRIIVAS
FASHVHRVQQVLDAAAAHGRRVALVGRSMVRNMAIAADLGYLKVPDGVLVDLKGVDDLPD
DEVVLMCTGSQGEPMAALSRMANNDHKISVGAGDTVILASSLIPGNENAVFRVINGLTRL
GARVVHSGNAKVHVSGHASAGELLYCYNILRPRNVMPVHGEVRHLVANGALAVQTGVPAD
RVVLAEDGVVVDLVDGRASVVGAVPCGYVYVDGSSVGGITEAELKDRRILGDEGFISIFA
VVSSADGKVLAGPQIHARGFAEQDDVFEDILPELTRTLEEAIAQGATDTHQLQQIMRRVV
GRWVSSRLRRRPMIIPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccacccccaccccgagctgaccccgccgcccccgctccccgaggggggcctgcgc
gtcgtcgcgctcggcgggctcggcgaggtcggccggaacatggccgtgctggagttcggc
gggcgcctgctcgtcgtcgactgcggcgtgctgttccccgaggaccaccagcccggcgtc
gacctgatcctgccggacttcgactacatccgggaccggctcgacgacatcgaggcgatc
gtgctcacgcacggtcacgaggaccacatcggtgccgtgccctacctgctgcgcctgcgc
tcggacatcccgctcgtcggctcgcagctcacgctcgcgttcgtcgaggccaagctcaag
gagcaccgcatcacgccgctgacgctcgcggtgcgcgagggtcaggtcgagcagctcggt
gtgttcgactgcgagttcgtcgcggtcaaccactccatcccggacgcgctcgccgtcgcg
gtcaccacccccgccgggaccgtcctgcacacgggcgacttcaagatggaccagctcccg
ctcgacgggcggatcaccgacctgcgcgcgttcgcgcggctcggcgagaagggagtcgac
ctgttcatggtcgactcgaccaacgccgaggtgccgggcttcgtcgcgccggagcgcggc
atcggccccgtgctcgacggcgtgttcgccgagtcgagcaagcgcatcatcgtcgcgtcc
ttcgcctcgcacgtgcaccgcgtgcagcaggtcctcgacgccgccgccgcgcacgggcgg
cgcgtggccctcgtcggccgctcgatggtccgcaacatggcgatcgccgccgacctcggc
tacctcaaggtgcccgacggtgtgctcgtcgacctcaagggcgtcgacgacctgcccgac
gacgaggtcgtcctcatgtgcacggggtcgcagggcgagcccatggccgcgctgtcgcgc
atggcgaacaacgaccacaagatctcggtcggcgcgggggacaccgtgatcctcgcgtcg
tcgctgatccccggcaacgagaacgcggtgttccgcgtcatcaacgggctcacgcgcctc
ggtgcgcgcgtcgtgcactccggcaacgcgaaggtgcacgtgtccgggcacgcgtccgcg
ggcgagctcctgtactgctacaacatcctgcggccgcgcaacgtcatgcccgtgcacggc
gaggtgcgccacctcgtcgcgaacggcgcgctcgccgtgcagaccggcgtgcccgccgac
cgcgtggtgctcgccgaggacggggtggtcgtcgacctggtcgacgggcgcgcgtcggtg
gtcggcgccgtgccgtgcgggtacgtgtacgtcgatgggtcgagcgtcggcggcatcacc
gaggccgagctcaaggaccgccggatcctcggcgacgaggggttcatctcgatcttcgcc
gtggtgtcgtccgcggacggcaaggtgctcgcgggtccgcagatccacgcgcgcgggttc
gccgagcaggacgacgtcttcgaggacatcctcccggagctcacgcggacgctcgaggag
gcgatcgcgcagggtgcgaccgacacgcaccagctgcagcagatcatgcgccgcgtggtc
ggccgctgggtctcgagccgcctgcgccggcgtccgatgatcatccccgtggtggtggag
gcctga
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