Cellulomonas palmilytica: F1D97_11565
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Entry
F1D97_11565 CDS
T08423
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1D97_11565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpal03019
]
F1D97_11565
03009 Ribosome biogenesis [BR:
cpal03009
]
F1D97_11565
Enzymes [BR:
cpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1D97_11565
Messenger RNA biogenesis [BR:
cpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1D97_11565
Ribosome biogenesis [BR:
cpal03009
]
Prokaryotic type
rRNA helicases
F1D97_11565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UJP39002
LinkDB
All DBs
Position
2565085..2566911
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AA seq
608 aa
AA seq
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MSLPSGTRAPSHVLTTSSTDASTPAPAGPDSPVGAPAPTFDDLGLPAALHRAVTDLGFTT
PSAIQERAVPALLGGRDLLGVAQTGTGKTAAFGLPLLAAVDPELRAVQAVVLAPTRELAM
QVADAISSFAAHLPGVDVVPVYGGSPYLPQQRALQRGAQVVVGTPGRVIDHLERGSLVLD
QVRFLVLDEADEMLRMGFAEDVDKVLSRAPRERQVALFSATMPAPIRRVAEQHMVDPVEV
TVARQSSTVTTVRQTYAVVPHRHKAGALARVLAVTEADAAIVFVRTRGNAEELGSALVER
GVSAAYISGDVAQGEREKIVERLRSGALDVLVATDVAARGLDVERIGLVVNYDVPREPET
YVHRIGRTGRAGRDGTALTFVTPAEQSRLRTIERTTRTTLEQVAIPSPAEVSAHRVRTLL
ARVPQRTEAGRLDVYRTAVADLVRQEPGTDLAELLATVLALAVGDEGPAAADDLDDALAR
AAAMPTRDRVGAHRDGAPPRERRRTSTHIAGGPPRWRVAVGHRDGLQPGALVGALTGEGG
LTGADVGKIDIFPSFALVDIPGGLSPEAVDRLSRTRVAGRPLRIRVDSGPRGGQGASRAG
HAPSRARS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgccctcgggcacccgtgcgccttcgcacgtcctcaccacctcctcgactgac
gcgagcacgcccgcgcccgccggtcccgactcccccgtcggcgcgcccgcgccgacgttc
gacgacctgggtctgcccgccgcgctgcaccgtgcggtcacggacctcggcttcaccacg
ccgtccgccatccaggagcgcgccgtcccggccctgctcggcgggcgcgacctgctcggc
gtcgcccagaccggcaccggcaagaccgccgcgttcggcctcccgctgctcgccgcggtg
gacccggagctgcgcgccgtgcaggccgtggtgctcgcccccacgcgtgagctcgcgatg
caggtcgcggacgcgatctcgtcgttcgcggcgcaccttcccggcgtcgacgtcgtgccc
gtgtacggcggctcgccgtacctgccgcagcagcgcgcgctgcagcgcggcgcgcaggtc
gtcgtcgggacgcccggccgcgtgatcgaccacctggagcgcgggtcgctcgtgctcgac
caggtgcgcttcctcgtgctcgacgaggccgacgagatgctgcgcatgggcttcgcggag
gacgtcgacaaggtcctctcgcgcgcgccgcgcgagcgtcaggtcgcgctgttctcggcc
acgatgcccgcgccgatccgccgcgtcgcggagcagcacatggtcgacccggtcgaggtg
accgtggcccgtcagtcctcgaccgtgacgaccgtgcgccagacgtacgcggtggtcccg
caccggcacaaggcgggtgcgctcgcacgcgtcctcgccgtgacggaggcggacgccgcg
atcgtgttcgtccgcacgcgcggcaacgccgaggagctcggctcggcgctcgtcgagcgc
ggcgtgtcggcggcctacatctcgggcgacgtcgcccagggcgagcgggagaagatcgtc
gagcggctgcgcagcggcgcgctcgacgtgctcgtcgccaccgacgtcgcggcccgcggg
ctcgacgtcgagcgcatcggcctcgtcgtgaactacgacgtcccgcgcgagccggagacg
tacgtgcaccgcatcggccgtacgggccgcgcgggccgcgacggcaccgcgctgacgttc
gtgacgcccgcggagcagtcccgcctgcgcacgatcgagcgcacgacccggaccacgctc
gagcaggtggccatcccgtcccccgccgaggtcagcgcgcaccgcgtgcgcacgctgctg
gcgcgcgtcccgcagcgcacggaggccgggcgcctcgacgtgtaccgcaccgcggtcgcc
gacctcgtgcgccaggagcccggtacggacctcgccgagctgctcgcgaccgtgctcgcg
ctcgccgtgggcgacgagggccccgccgcggcggacgacctcgacgacgcgctcgcgcgc
gccgcggcgatgccgacccgcgaccgggtcggggcgcaccgcgacggcgcgccgccgcgc
gagcgccgccgcacgagcacgcacatcgcgggcggtccgccgcgctggcgcgtcgccgtg
ggtcaccgggacggcctgcagccgggtgcgctggtcggcgcgctcaccggcgagggcggc
ctgaccggcgcggacgtcggcaagatcgacatcttccccagcttcgcgctcgtcgacatc
cccggcgggctctcccccgaggccgtcgaccgcctgtcgcgcacgcgcgtcgcgggtcgg
ccgctgcgcatccgcgtggactccggcccgcgcggcggtcagggcgcgagccgcgccggc
cacgcgccgtcgcgcgcccggtcctga
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