Cellulomonas palmilytica: F1D97_11615
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Entry
F1D97_11615 CDS
T08423
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpal
Cellulomonas palmilytica
Pathway
cpal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F1D97_11615 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpal03400
]
F1D97_11615 (ligD)
Enzymes [BR:
cpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F1D97_11615 (ligD)
DNA repair and recombination proteins [BR:
cpal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F1D97_11615 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UJP41754
LinkDB
All DBs
Position
2579676..2580599
Genome browser
AA seq
307 aa
AA seq
DB search
MLATPATSGELPRGPAWAFEVKWDGVRVIADTTGGGLRLWSRAEREVTPAYPELAGLVSL
PDTLLDGEVVAMDAGIPSFPAIAERMHVRDPRRAAELARVRPVTYLVFDALRVAGVDLAS
RPYDERRAVLEALTLPDHVALSPVYTDGDELWSVTGAHGLEGVVAKRRASPYRPGVRSPD
WVKAAHRHHVAVLVGGWREETNGSGRLGALLLGARDAAGSLRYLGRAGSGITGALARRLH
DAVAPLGTAVSPFDDEVPRVDARGTHWCTPTLVVQVRYLTRTPQGRLRQPVVLGARDDTS
PDPWEAA
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacccccgcgacctcgggcgagctgccgcgcggtcccgcgtgggcgttcgag
gtcaagtgggacggcgtgcgcgtgatcgcggacaccacgggcggtgggctgcggctgtgg
agccgcgccgagcgtgaggtgacgcccgcgtacccggagctcgcgggcctcgtgtccctg
ccggacacgttgctcgacggcgaggtcgtcgcgatggacgcgggcatcccgtcgttcccg
gcgatcgcggagcgcatgcacgtgcgtgacccgcgccgcgcggccgagctcgcgcgcgtg
cgaccggtgacgtacctcgtgttcgacgcgctgcgggtcgcgggcgtggacctcgcgtcg
cgcccgtacgacgagcgccgcgcggtgctcgaggcgctcacgctgcccgaccacgtggca
ctctcaccggtctacaccgacggcgacgagctctggtcggtcacgggggcgcacgggctg
gagggcgtcgtcgcgaagcgtcgtgcgtcgccgtaccggccgggcgtccgctcgcccgac
tgggtcaaggcggcgcaccgccaccacgtcgcggtgctcgtgggcgggtggcgcgaggag
accaacgggtcgggccggctcggcgcgctgctgctcggcgcgcgtgacgccgcggggtcc
ctgcgatatctcggccgtgcgggcagcgggatcacgggcgcgctcgcgcgccgcctgcac
gacgcggtcgcgccgctcggcacggctgtgagcccgttcgacgacgaggtaccgcgcgtc
gacgcgcgcggcacgcactggtgcacgccgacgctcgtcgtgcaggtgcgctacctgacc
cgcacaccccagggccggctgcgccagccggtcgtgctgggcgcgcgggacgacacgagc
ccggacccctgggaggcggcatga
DBGET
integrated database retrieval system
